Aliases for RPS15AP38 Gene

Aliases for RPS15AP38 Gene

  • Ribosomal Protein S15a Pseudogene 38 2 3 5
  • RPS15A_25_1749 3

External Ids for RPS15AP38 Gene

Previous GeneCards Identifiers for RPS15AP38 Gene

  • GC22U900530
  • GC22M036818

Summaries for RPS15AP38 Gene

GeneCards Summary for RPS15AP38 Gene

RPS15AP38 (Ribosomal Protein S15a Pseudogene 38) is a Pseudogene.

Additional gene information for RPS15AP38 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS15AP38 Gene

Genomics for RPS15AP38 Gene

GeneHancer (GH) Regulatory Elements for RPS15AP38 Gene

Promoters and enhancers for RPS15AP38 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J036418 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.7 1672 2.9 EP300 FOXK2 POLR2G USF1 NCOR1 ZIC2 KDM6A TCF7 FOXA1 REST RPS15AP38 FOXRED2 piR-38579-030
GH22J036422 Enhancer 1.1 ENCODE dbSUPER 500.7 -1.7 -1689 1.9 POLR2G KDM6A ZBTB11 TCF7 HES1 TGIF2 RUNX1 CTBP1 NCOR1 ZNF282 RPS15AP38 FOXRED2 RF00951-103
GH22J037014 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 12.7 -599.0 -599012 12.5 HNRNPK ZBTB40 EP300 CTCF POLR2G USF1 NCOR1 PHF8 JUND ZFX MPST TST EIF3D RBFOX2 RPS15AP38 KCTD17 ENSG00000231467 TMPRSS6 NCF4-AS1 NCF4
GH22J036409 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.1 +11.3 11300 3.9 EP300 CTCF POLR2G SP1 NCOR1 TEAD4 ZFX POLR2A GABPA ZBTB26 EIF3D RPS15AP38 FOXRED2 TXN2 piR-43106-139 piR-38579-030 LOC105377199
GH22J035586 Enhancer 1.4 VISTA Ensembl ENCODE dbSUPER 19 +830.9 830883 8.4 TCF12 FOS ZNF639 ZIC2 TRIM28 RFX1 KLF7 CTBP1 EP300 HDAC2 HSALNG0135169 HMGXB4 EIF3D RPS15AP38 RASD2 MCM5 MB APOL6 HSALNG0135166
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS15AP38 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS15AP38 Gene

Genomic Locations for RPS15AP38 Gene
chr22:36,421,230-36,421,661
(GRCh38/hg38)
Size:
432 bases
Orientation:
Minus strand
chr22:36,817,275-36,817,773
(GRCh37/hg19)
Size:
499 bases
Orientation:
Minus strand

Genomic View for RPS15AP38 Gene

Genes around RPS15AP38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP38 Gene

Proteins for RPS15AP38 Gene

Post-translational modifications for RPS15AP38 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP38 Gene

Domains & Families for RPS15AP38 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS15AP38 Gene

Function for RPS15AP38 Gene

Phenotypes From GWAS Catalog for RPS15AP38 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP38 Gene

Localization for RPS15AP38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15AP38 Gene

Pathways & Interactions for RPS15AP38 Gene

PathCards logo

SuperPathways for RPS15AP38 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPS15AP38 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS15AP38 Gene

Drugs & Compounds for RPS15AP38 Gene

No Compound Related Data Available

Transcripts for RPS15AP38 Gene

mRNA/cDNA for RPS15AP38 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP38 Gene

No ASD Table

Relevant External Links for RPS15AP38 Gene

GeneLoc Exon Structure for
RPS15AP38

Expression for RPS15AP38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS15AP38 Gene

genes like me logo Genes that share expression patterns with RPS15AP38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP38 Gene

Orthologs for RPS15AP38 Gene

Evolution for RPS15AP38 Gene

ENSEMBL:
Gene Tree for RPS15AP38 (if available)
TreeFam:
Gene Tree for RPS15AP38 (if available)

No data available for Orthologs for RPS15AP38 Gene

Paralogs for RPS15AP38 Gene

No data available for Paralogs for RPS15AP38 Gene

Variants for RPS15AP38 Gene

Additional Variant Information for RPS15AP38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15AP38 Gene

Disorders for RPS15AP38 Gene

No disorders were found for RPS15AP38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS15AP38 Gene

Publications for RPS15AP38 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54

No data available for Mastermind for RPS15AP38 Gene

Products for RPS15AP38 Gene

Sources for RPS15AP38 Gene