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Aliases for RPS15AP38 Gene

Aliases for RPS15AP38 Gene

  • Ribosomal Protein S15a Pseudogene 38 2 3 5
  • RPS15A_25_1749 3

External Ids for RPS15AP38 Gene

Previous GeneCards Identifiers for RPS15AP38 Gene

  • GC22U900530
  • GC22M036818

Summaries for RPS15AP38 Gene

GeneCards Summary for RPS15AP38 Gene

RPS15AP38 (Ribosomal Protein S15a Pseudogene 38) is a Pseudogene.

Additional gene information for RPS15AP38 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS15AP38 Gene

Genomics for RPS15AP38 Gene

GeneHancer (GH) Regulatory Elements for RPS15AP38 Gene

Promoters and enhancers for RPS15AP38 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I036418 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.6 1624 2.8 FOXA2 MLX ARID4B FEZF1 DMAP1 YY1 SLC30A9 SP5 NFYC ZHX2 RPS15AP38 FOXRED2 GC22M036384
GH22I035586 Enhancer 1.6 VISTA Ensembl ENCODE dbSUPER 19 +831.2 831185 7.8 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 KLF7 FOS ATF7 KLF13 HMGXB4 EIF3D RPS15AP38 RASD2 MCM5 MB APOL6 ENSG00000268818
GH22I035834 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 9.9 +583.9 583903 7.4 PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 YY1 ZNF143 KLF13 SP3 ZNF662 RBFOX2 GC22M035839 RPL41P3 PIR58099 HMGXB4 EIF3D MCM5 IFT27 APOL6 MB
GH22I037144 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 -726.3 -726344 6.5 HDGF PKNOX1 ATF1 SMAD1 YBX1 IRF4 ETS1 GATA2 ZNF207 ZNF143 IL2RB EIF3D TRIOBP RPS15AP38 PDXP SH3BP1 RAC2 MFNG ENSG00000235237 TMPRSS6
GH22I035540 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 10.7 +881.1 881060 0.8 CLOCK KLF17 GLI4 ZNF335 ZNF121 GLIS2 ZNF366 EGR2 SP3 ZNF398 RASD2 MCM5 EIF3D HMGXB4 RPS15AP38 ENSG00000268818
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS15AP38 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS15AP38 Gene

Genomic Locations for RPS15AP38 Gene
chr22:36,421,230-36,421,661
(GRCh38/hg38)
Size:
432 bases
Orientation:
Minus strand
chr22:36,817,275-36,817,773
(GRCh37/hg19)

Genomic View for RPS15AP38 Gene

Genes around RPS15AP38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP38 Gene

Proteins for RPS15AP38 Gene

Post-translational modifications for RPS15AP38 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP38 Gene

Domains & Families for RPS15AP38 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS15AP38 Gene

Function for RPS15AP38 Gene

Phenotypes From GWAS Catalog for RPS15AP38 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP38 Gene

Localization for RPS15AP38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15AP38 Gene

Pathways & Interactions for RPS15AP38 Gene

SuperPathways for RPS15AP38 Gene

No Data Available

Interacting Proteins for RPS15AP38 Gene

Gene Ontology (GO) - Biological Process for RPS15AP38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS15AP38 Gene

Drugs & Compounds for RPS15AP38 Gene

No Compound Related Data Available

Transcripts for RPS15AP38 Gene

mRNA/cDNA for RPS15AP38 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP38 Gene

No ASD Table

Relevant External Links for RPS15AP38 Gene

GeneLoc Exon Structure for
RPS15AP38
ECgene alternative splicing isoforms for
RPS15AP38

Expression for RPS15AP38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS15AP38 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS15AP38 Gene:

RPS15AP38
genes like me logo Genes that share expression patterns with RPS15AP38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP38 Gene

Orthologs for RPS15AP38 Gene

Evolution for RPS15AP38 Gene

ENSEMBL:
Gene Tree for RPS15AP38 (if available)
TreeFam:
Gene Tree for RPS15AP38 (if available)

No data available for Orthologs for RPS15AP38 Gene

Paralogs for RPS15AP38 Gene

No data available for Paralogs for RPS15AP38 Gene

Variants for RPS15AP38 Gene

Additional Variant Information for RPS15AP38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15AP38 Gene

Disorders for RPS15AP38 Gene

No disorders were found for RPS15AP38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS15AP38 Gene

Publications for RPS15AP38 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS15AP38 Gene

Sources for RPS15AP38 Gene

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