Aliases for RPS15AP28 Gene

Aliases for RPS15AP28 Gene

  • Ribosomal Protein S15a Pseudogene 28 2 3 5
  • RPS15A_16_1058 3

External Ids for RPS15AP28 Gene

Previous GeneCards Identifiers for RPS15AP28 Gene

  • GC10M070732
  • GC10M071061

Summaries for RPS15AP28 Gene

GeneCards Summary for RPS15AP28 Gene

RPS15AP28 (Ribosomal Protein S15a Pseudogene 28) is a Pseudogene.

Additional gene information for RPS15AP28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS15AP28 Gene

Genomics for RPS15AP28 Gene

GeneHancer (GH) Regulatory Elements for RPS15AP28 Gene

Promoters and enhancers for RPS15AP28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J069303 Enhancer 0.8 Ensembl 0.7 -3.0 -2954 0.8 RBAK ZNF623 ZNF510 KLF7 ZEB1 MYNN NFIC ZBTB11 ZNF426 FOSL1 CCAR1 DDX50 HNRNPH3 SAR1A TYSND1 VPS26A KIFBP RUFY2 SUPV3L1 NPFFR1
GH10J069278 Promoter/Enhancer 0.9 EPDnew Ensembl ENCODE 0.4 +21.5 21546 2.6 TEAD4 NFIC SPI1 MNT MAX HK1 HKDC1 NONHSAG006109.2 RPS15AP28
GH10J069308 Enhancer 0.7 dbSUPER 0.4 -8.0 -8040 0.7 PHB2 NCOR1 TRIM24 TAL1 NR2F1 HDAC2 FOXM1 NCOA1 TCF12 DPF2 piR-50437-063 RPS15AP28 HK1 NONHSAG006109.2
GH10J069271 Enhancer 0.6 Ensembl 0.3 +28.7 28746 3 NR2F2 TRIM24 TRIM28 ZNF280A FOS ZC3H8 HLTF ZEB2 JUN ARNT HKDC1 HK1 NONHSAG006109.2 RPS15AP28
GH10J069285 Enhancer 0.4 Ensembl 0.4 +14.9 14946 0.6 CEBPB ESRRA PKNOX1 ZNF770 ZNF121 HKDC1 RPS15AP28 HK1 NONHSAG006109.2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS15AP28 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS15AP28 Gene

Genomic Locations for RPS15AP28 Gene
chr10:69,300,393-69,300,847
(GRCh38/hg38)
Size:
455 bases
Orientation:
Minus strand
chr10:71,060,149-71,060,603
(GRCh37/hg19)
Size:
455 bases
Orientation:
Minus strand

Genomic View for RPS15AP28 Gene

Genes around RPS15AP28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP28 Gene

Proteins for RPS15AP28 Gene

Post-translational modifications for RPS15AP28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP28 Gene

Domains & Families for RPS15AP28 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS15AP28 Gene

Function for RPS15AP28 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP28 Gene

Localization for RPS15AP28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15AP28 Gene

Pathways & Interactions for RPS15AP28 Gene

PathCards logo

SuperPathways for RPS15AP28 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPS15AP28 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS15AP28 Gene

Drugs & Compounds for RPS15AP28 Gene

No Compound Related Data Available

Transcripts for RPS15AP28 Gene

mRNA/cDNA for RPS15AP28 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP28 Gene

No ASD Table

Relevant External Links for RPS15AP28 Gene

GeneLoc Exon Structure for
RPS15AP28

Expression for RPS15AP28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS15AP28 Gene

mRNA differential expression in normal tissues according to GTEx for RPS15AP28 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with RPS15AP28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP28 Gene

Orthologs for RPS15AP28 Gene

Evolution for RPS15AP28 Gene

ENSEMBL:
Gene Tree for RPS15AP28 (if available)
TreeFam:
Gene Tree for RPS15AP28 (if available)

No data available for Orthologs for RPS15AP28 Gene

Paralogs for RPS15AP28 Gene

No data available for Paralogs for RPS15AP28 Gene

Variants for RPS15AP28 Gene

Additional Variant Information for RPS15AP28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15AP28 Gene

Disorders for RPS15AP28 Gene

No disorders were found for RPS15AP28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS15AP28 Gene

Publications for RPS15AP28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54

No data available for Mastermind for RPS15AP28 Gene

Products for RPS15AP28 Gene

Sources for RPS15AP28 Gene