Aliases for RPS15AP27 Gene

Aliases for RPS15AP27 Gene

  • Ribosomal Protein S15a Pseudogene 27 2 3 5
  • RPS15A_15_1003 3
  • RPS15AP27 5

External Ids for RPS15AP27 Gene

Previous GeneCards Identifiers for RPS15AP27 Gene

  • GC09U901243
  • GC09M110726

Summaries for RPS15AP27 Gene

GeneCards Summary for RPS15AP27 Gene

RPS15AP27 (Ribosomal Protein S15a Pseudogene 27) is a Pseudogene.

Additional gene information for RPS15AP27 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS15AP27 Gene

Genomics for RPS15AP27 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS15AP27 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J107989 Enhancer 1 FANTOM5 Ensembl dbSUPER 0.3 -27.3 -27326 8 CEBPA ATF3 YY1 CEBPB EP300 FOXA2 RXRA ZBTB33 JUND SPI1 KLF4 lnc-RAD23B-11 RPS15AP27 LOC105376211 lnc-ACTL7B-11 ACTL7B
GH09J107983 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -17.6 -17625 5 MAFF ZNF316 MAFK MAFG CREB1 EMSY RPS15AP27 lnc-RAD23B-11 LOC105376211 KLF4 ACTL7B lnc-ACTL7B-11
GH09J107976 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 -13.0 -13026 1.4 RAD21 NR2F2 RPS15AP27 lnc-RAD23B-11 LOC105376211 KLF4 lnc-ACTL7B-11 ACTL7B
GH09J107962 Enhancer 0.3 Ensembl dbSUPER 0.7 +2.1 2074 4.8 RPS15AP27 lnc-KLF4-4 piR-35674-540 LOC105376211 KLF4 lnc-ACTL7B-11 ACTL7B
GH09J107971 Enhancer 0.3 Ensembl ENCODE 0.4 -7.1 -7132 0.8 RPS15AP27 LOC105376211 lnc-RAD23B-11 KLF4 ACTL7B lnc-ACTL7B-11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS15AP27 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS15AP27 Gene

Latest Assembly
chr9:107,963,661-107,964,075
(GRCh38/hg38)
Size:
415 bases
Orientation:
Minus strand

Previous Assembly
chr9:110,725,942-110,726,356
(GRCh37/hg19 by Entrez Gene)
Size:
415 bases
Orientation:
Minus strand

chr9:110,725,984-110,726,326
(GRCh37/hg19 by Ensembl)
Size:
343 bases
Orientation:
Minus strand

Genomic View for RPS15AP27 Gene

Genes around RPS15AP27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP27 Gene

Proteins for RPS15AP27 Gene

Post-translational modifications for RPS15AP27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP27 Gene

Domains & Families for RPS15AP27 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS15AP27 Gene

Function for RPS15AP27 Gene

Phenotypes From GWAS Catalog for RPS15AP27 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP27 Gene

Localization for RPS15AP27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15AP27 Gene

Pathways & Interactions for RPS15AP27 Gene

PathCards logo

SuperPathways for RPS15AP27 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS15AP27 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS15AP27 Gene

Drugs & Compounds for RPS15AP27 Gene

No Compound Related Data Available

Transcripts for RPS15AP27 Gene

mRNA/cDNA for RPS15AP27 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP27 Gene

No ASD Table

Relevant External Links for RPS15AP27 Gene

GeneLoc Exon Structure for
RPS15AP27

Expression for RPS15AP27 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS15AP27 Gene

genes like me logo Genes that share expression patterns with RPS15AP27: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP27 Gene

Orthologs for RPS15AP27 Gene

Evolution for RPS15AP27 Gene

ENSEMBL:
Gene Tree for RPS15AP27 (if available)
TreeFam:
Gene Tree for RPS15AP27 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPS15AP27

No data available for Orthologs for RPS15AP27 Gene

Paralogs for RPS15AP27 Gene

No data available for Paralogs for RPS15AP27 Gene

Variants for RPS15AP27 Gene

Additional Variant Information for RPS15AP27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP27
Leiden Open Variation Database (LOVD)
RPS15AP27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15AP27 Gene

Disorders for RPS15AP27 Gene

No disorders were found for RPS15AP27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS15AP27 Gene

Publications for RPS15AP27 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. A second-generation genomewide screen for asthma-susceptibility alleles in a founder population. (PMID: 11022011) Ober C … Cox NJ (American journal of human genetics 2000) 40

No data available for Mastermind for RPS15AP27 Gene

Products for RPS15AP27 Gene

Sources for RPS15AP27 Gene