Aliases for RPS13P1 Gene

Aliases for RPS13P1 Gene

  • Ribosomal Protein S13 Pseudogene 1 2 3
  • Ribosomal Protein S13 (RPS13) Pseudogene 5
  • RPS13_1_111 3
  • AL451074.4 5

External Ids for RPS13P1 Gene

Previous GeneCards Identifiers for RPS13P1 Gene

  • GC01P163909
  • GC01P165641

Summaries for RPS13P1 Gene

GeneCards Summary for RPS13P1 Gene

RPS13P1 (Ribosomal Protein S13 Pseudogene 1) is a Pseudogene.

Additional gene information for RPS13P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS13P1 Gene

Genomics for RPS13P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS13P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J165670 Enhancer 0.3 Ensembl 600.7 +1.0 1045 7.4 ATF2 RPS13P1 lnc-MGST3-3 piR-47675-004 MGST3 ALDH9A1 MN308827
GH01J165597 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 10.1 -73.1 -73055 2.8 SP1 CREB1 PRDM10 ZNF512 RFX1 ZNF692 POLR2A BACH1 FOS JUND ENSG00000236206 RF00005-020 TRK-CTT13-1 ENSG00000215835 RPS13P1 LRRC52 MGST3 lnc-ALDH9A1-3
GH01J165666 Enhancer 0.5 Ensembl 0.7 -4.8 -4756 2.2 ZNF184 CEBPB RUNX3 MEF2D CEBPG ZNF121 lnc-TMCO1-4 ALDH9A1 MGST3 MN308827 RPS13P1 lnc-MGST3-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS13P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS13P1 Gene

Genomic Locations for RPS13P1 Gene
chr1:165,671,256-165,671,731
(GRCh38/hg38)
Size:
476 bases
Orientation:
Plus strand
chr1:165,640,493-165,640,968
(GRCh37/hg19)
Size:
476 bases
Orientation:
Plus strand

Genomic View for RPS13P1 Gene

Genes around RPS13P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS13P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS13P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS13P1 Gene

Proteins for RPS13P1 Gene

Post-translational modifications for RPS13P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS13P1 Gene

Domains & Families for RPS13P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS13P1 Gene

Function for RPS13P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS13P1 Gene

Localization for RPS13P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS13P1 Gene

Pathways & Interactions for RPS13P1 Gene

PathCards logo

SuperPathways for RPS13P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS13P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS13P1 Gene

Drugs & Compounds for RPS13P1 Gene

No Compound Related Data Available

Transcripts for RPS13P1 Gene

mRNA/cDNA for RPS13P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS13P1 Gene

No ASD Table

Relevant External Links for RPS13P1 Gene

GeneLoc Exon Structure for
RPS13P1

Expression for RPS13P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS13P1 Gene

mRNA differential expression in normal tissues according to GTEx for RPS13P1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.5) and Brain - Cerebellum (x4.3).
genes like me logo Genes that share expression patterns with RPS13P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS13P1 Gene

Orthologs for RPS13P1 Gene

Evolution for RPS13P1 Gene

ENSEMBL:
Gene Tree for RPS13P1 (if available)
TreeFam:
Gene Tree for RPS13P1 (if available)

No data available for Orthologs for RPS13P1 Gene

Paralogs for RPS13P1 Gene

No data available for Paralogs for RPS13P1 Gene

Variants for RPS13P1 Gene

Additional Variant Information for RPS13P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS13P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS13P1 Gene

Disorders for RPS13P1 Gene

No disorders were found for RPS13P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS13P1 Gene

Publications for RPS13P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS13P1 Gene

Products for RPS13P1 Gene

Sources for RPS13P1 Gene