Aliases for RPS12P21 Gene

Aliases for RPS12P21 Gene

  • Ribosomal Protein S12 Pseudogene 21 2 3 5
  • RPS12_11_1175 3
  • RPS12P21 5

External Ids for RPS12P21 Gene

Previous GeneCards Identifiers for RPS12P21 Gene

  • GC11U901283
  • GC11P112090

Summaries for RPS12P21 Gene

GeneCards Summary for RPS12P21 Gene

RPS12P21 (Ribosomal Protein S12 Pseudogene 21) is a Pseudogene.

Additional gene information for RPS12P21 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS12P21 Gene

Genomics for RPS12P21 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS12P21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J112219 Enhancer 0.8 Ensembl ENCODE 250.7 +1.8 1755 0.8 CTCF REST TRIM22 SMC3 RAD21 ZNF2 MLLT1 ZNF143 STAT1 CREM RPS12P21 lnc-PTS-4 PTS lnc-PLET1-8 BCO2
GH11J112216 Enhancer 0.6 ENCODE 250.7 -1.6 -1611 0.2 CEBPB FOXA2 EP300 RXRA ZBTB33 JUND HNF4A FOXA1 RAD21 REST RPS12P21 lnc-PTS-4 RNU6-44P HSALNG0087179 PTS BCO2
GH11J112217 Enhancer 0.6 Ensembl 250.7 -1.3 -1343 0.2 EP300 RXRA ZBTB33 JUND HNF4A FOXA1 RAD21 REST MAX SP1 RPS12P21 lnc-PTS-4 RNU6-44P HSALNG0087179 PTS BCO2
GH11J112270 Promoter/Enhancer 1 Ensembl ENCODE 12.8 +52.6 52557 0.8 ELF1 TAL1 ZNF316 FOXK2 ZEB2 NRF1 TCF12 POLR2A L3MBTL2 ARID1B LINC02762 lnc-PLET1-2 PTS RPS12P21 RNU6-44P PLET1 piR-61240-064 NCAM1
GH11J112286 Enhancer 0.7 Ensembl 12.6 +68.1 68057 1 VEZF1 TAL1 FOSL1 ATF1 HDAC2 STAT5A TCF12 NFE2 MAFG TEAD4 PTS RPS12P21 PLET1 lnc-PLET1-2 LINC02762 piR-61240-064 NCAM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS12P21 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS12P21 Gene

Latest Assembly
chr11:112,218,244-112,218,742
(GRCh38/hg38)
Size:
499 bases
Orientation:
Plus strand

Previous Assembly
chr11:112,088,967-112,089,465
(GRCh37/hg19 by Entrez Gene)
Size:
499 bases
Orientation:
Plus strand

chr11:112,089,049-112,089,443
(GRCh37/hg19 by Ensembl)
Size:
395 bases
Orientation:
Plus strand

Genomic View for RPS12P21 Gene

Genes around RPS12P21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS12P21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS12P21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS12P21 Gene

Proteins for RPS12P21 Gene

Post-translational modifications for RPS12P21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS12P21 Gene

Domains & Families for RPS12P21 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS12P21 Gene

Function for RPS12P21 Gene

Phenotypes From GWAS Catalog for RPS12P21 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS12P21 Gene

Localization for RPS12P21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS12P21 Gene

Pathways & Interactions for RPS12P21 Gene

PathCards logo

SuperPathways for RPS12P21 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS12P21 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS12P21 Gene

Drugs & Compounds for RPS12P21 Gene

No Compound Related Data Available

Transcripts for RPS12P21 Gene

mRNA/cDNA for RPS12P21 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS12P21 Gene

No ASD Table

Relevant External Links for RPS12P21 Gene

GeneLoc Exon Structure for
RPS12P21

Expression for RPS12P21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS12P21 Gene

mRNA differential expression in normal tissues according to GTEx for RPS12P21 Gene

This gene is overexpressed in Heart - Left Ventricle (x7.9), Liver (x5.8), and Heart - Atrial Appendage (x5.4).
genes like me logo Genes that share expression patterns with RPS12P21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS12P21 Gene

Orthologs for RPS12P21 Gene

Evolution for RPS12P21 Gene

ENSEMBL:
Gene Tree for RPS12P21 (if available)
TreeFam:
Gene Tree for RPS12P21 (if available)

No data available for Orthologs for RPS12P21 Gene

Paralogs for RPS12P21 Gene

No data available for Paralogs for RPS12P21 Gene

Variants for RPS12P21 Gene

Additional Variant Information for RPS12P21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS12P21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS12P21 Gene

Disorders for RPS12P21 Gene

No disorders were found for RPS12P21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS12P21 Gene

Publications for RPS12P21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS12P21 Gene

Products for RPS12P21 Gene

Sources for RPS12P21 Gene