Aliases for RPS12P20 Gene

Aliases for RPS12P20 Gene

  • Ribosomal Protein S12 Pseudogene 20 2 3 5
  • RPS12_10_1153 3
  • RPS12P20 5

External Ids for RPS12P20 Gene

Previous GeneCards Identifiers for RPS12P20 Gene

  • GC11U901252
  • GC11P072420

Summaries for RPS12P20 Gene

GeneCards Summary for RPS12P20 Gene

RPS12P20 (Ribosomal Protein S12 Pseudogene 20) is a Pseudogene.

Additional gene information for RPS12P20 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS12P20 Gene

Genomics for RPS12P20 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS12P20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J072705 Enhancer 0.7 ENCODE dbSUPER 600.7 -1.8 -1845 1.4 ZIC2 EZH2 ZNF316 MAFK SIN3A GLIS1 EMSY RPS12P20 lnc-ATG16L2-10 STARD10 ARAP1-AS2 PDE2A ARAP1
GH11J072708 Enhancer 0.2 Ensembl 600.7 +0.3 315 0.6 RPS12P20 lnc-ATG16L2-10 STARD10 ARAP1 MN309279 PDE2A
GH11J072748 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +43.3 43320 5.9 GATAD2A HNRNPL PRDM10 TFE3 SOX13 IKZF1 NFKBIZ KDM1A BACH1 ZNF143 ARAP1 STARD10 NUMA1 RPS12P20 ARAP1-AS2 LOC100128494 ZNF705E IL18BP piR-47051 MN309280
GH11J072822 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +113.9 113896 2.3 HNRNPL TEAD4 PRDM10 SIX5 ZNF692 POLR2A ZIC2 RBFOX2 ZNF24 PATZ1 NUMA1 LOC100128494 IL18BP OR7E128P ARAP1 RPS12P20 ARAP1-AS2 RNU6-672P ARAP1-AS1 ATG16L2
GH11J072757 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +55.2 55215 11.2 HNRNPL CREB1 GATAD2A CTCF ZBTB33 ATF7 PRDM10 ZNF629 TFE3 RFX5 ARAP1 STARD10 ATG16L2 RPS12P20 ARAP1-AS2 PDE2A ARAP1-AS1 RNU6-672P ENSG00000254469 ENSG00000202522
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS12P20 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS12P20 Gene

Genomic Locations for RPS12P20 Gene
chr11:72,708,186-72,708,565
(GRCh38/hg38)
Size:
380 bases
Orientation:
Plus strand
chr11:72,419,231-72,419,610
(GRCh37/hg19)
Size:
380 bases
Orientation:
Plus strand

Genomic View for RPS12P20 Gene

Genes around RPS12P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS12P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS12P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS12P20 Gene

Proteins for RPS12P20 Gene

Post-translational modifications for RPS12P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS12P20 Gene

Domains & Families for RPS12P20 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS12P20 Gene

Function for RPS12P20 Gene

Phenotypes From GWAS Catalog for RPS12P20 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS12P20 Gene

Localization for RPS12P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS12P20 Gene

Pathways & Interactions for RPS12P20 Gene

PathCards logo

SuperPathways for RPS12P20 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS12P20 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS12P20 Gene

Drugs & Compounds for RPS12P20 Gene

No Compound Related Data Available

Transcripts for RPS12P20 Gene

mRNA/cDNA for RPS12P20 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS12P20 Gene

No ASD Table

Relevant External Links for RPS12P20 Gene

GeneLoc Exon Structure for
RPS12P20

Expression for RPS12P20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS12P20 Gene

mRNA differential expression in normal tissues according to GTEx for RPS12P20 Gene

This gene is overexpressed in Whole Blood (x7.6).
genes like me logo Genes that share expression patterns with RPS12P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS12P20 Gene

Orthologs for RPS12P20 Gene

Evolution for RPS12P20 Gene

ENSEMBL:
Gene Tree for RPS12P20 (if available)
TreeFam:
Gene Tree for RPS12P20 (if available)

No data available for Orthologs for RPS12P20 Gene

Paralogs for RPS12P20 Gene

No data available for Paralogs for RPS12P20 Gene

Variants for RPS12P20 Gene

Additional Variant Information for RPS12P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS12P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS12P20 Gene

Disorders for RPS12P20 Gene

No disorders were found for RPS12P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS12P20 Gene

Publications for RPS12P20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS12P20 Gene

Products for RPS12P20 Gene

Sources for RPS12P20 Gene