Free for academic non-profit institutions. Other users need a Commercial license

RPS11P6 Gene(Pseudogene)

Ribosomal Protein S11 Pseudogene 6

GCID:
GC12P064222
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RPS11P6 Gene

Aliases for RPS11P6 Gene

  • Ribosomal Protein S11 Pseudogene 6 2 3
  • RPS11_2_1249 3

External Ids for RPS11P6 Gene

Previous GeneCards Identifiers for RPS11P6 Gene

  • GC12P063077
  • GC12P064747
  • GC12P064617

Summaries for RPS11P6 Gene

GeneCards Summary for RPS11P6 Gene

RPS11P6 (Ribosomal Protein S11 Pseudogene 6) is a Pseudogene.

Additional gene information for RPS11P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS11P6 Gene

Genomics for RPS11P6 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPS11P6 Gene

Promoters and enhancers for RPS11P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12I064218 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 550.8 -1.7 -1739 4.9 PKNOX1 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 POLR2B RPS11P6 C12orf66 LOC100420899 LEMD3 C12orf56 RNU6-1009P
GH12I064450 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.9 +230.0 230030 3.6 PKNOX1 CLOCK ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF213 ZNF207 TBK1 ENSG00000277895 XPOT RPS11P6
GH12I064180 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -40.7 -40715 3.2 SIN3A RAD21 ZNF335 SMARCC2 FOS SMARCA5 ZNF174 SMARCC1 ZNF654 RXRA RNU6-1009P RPS11P6 C12orf66 GC12P064205 ENSG00000255629
GH12I064186 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.2 -34.7 -34713 2 HDAC1 NCOA3 PKNOX1 JUN BATF ZKSCAN1 FOS FOSL2 MAFK SMARCC1 RPS11P6 C12orf66 ENSG00000255629 GC12P064205
GH12I063821 Promoter/Enhancer 1 Ensembl ENCODE 10.6 -399.8 -399814 1.9 ZNF202 FOXA2 POLR2A YY1 TEAD3 PABPC1P4 TMEM5-AS1 TBK1 RPS11P6 XPOT LOC100420899 RNU6-1009P GC12M063829
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS11P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS11P6 Gene

Genomic Locations for RPS11P6 Gene
chr12:64,222,337-64,397,065
(GRCh38/hg38)
Size:
174,729 bases
Orientation:
Plus strand
chr12:64,616,117-64,790,845
(GRCh37/hg19)

Genomic View for RPS11P6 Gene

Genes around RPS11P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS11P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS11P6 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS11P6 Gene

Proteins for RPS11P6 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS11P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS11P6 Gene

Domains & Families for RPS11P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS11P6 Gene

Function for RPS11P6 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS11P6 Gene

Localization for RPS11P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS11P6 Gene

Pathways & Interactions for RPS11P6 Gene

SuperPathways for RPS11P6 Gene

PathCards logo More details on SuperPathways for RPS11P6
No Data Available

Interacting Proteins for RPS11P6 Gene

Gene Ontology (GO) - Biological Process for RPS11P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS11P6 Gene

Drugs & Compounds for RPS11P6 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS11P6 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPS11P6 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS11P6 Gene

No ASD Table

Relevant External Links for RPS11P6 Gene

GeneLoc Exon Structure for
RPS11P6
ECgene alternative splicing isoforms for
RPS11P6

Expression for RPS11P6 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS11P6 Gene

mRNA expression in normal human tissues for RPS11P6 Gene
mRNA expression by GTEx for RPS11P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS11P6 Gene

This gene is overexpressed in Testis (x17.9).

NURSA nuclear receptor signaling pathways regulating expression of RPS11P6 Gene:

RPS11P6
genes like me logo Genes that share expression patterns with RPS11P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS11P6 Gene

Orthologs for RPS11P6 Gene

Evolution for RPS11P6 Gene

ENSEMBL:
Gene Tree for RPS11P6 (if available)
TreeFam:
Gene Tree for RPS11P6 (if available)

No data available for Orthologs for RPS11P6 Gene

Paralogs for RPS11P6 Gene

No data available for Paralogs for RPS11P6 Gene

Variants for RPS11P6 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional Variant Information for RPS11P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS11P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS11P6 Gene

Disorders for RPS11P6 Gene

Additional Disease Information for RPS11P6

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RPS11P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS11P6 Gene

Publications for RPS11P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS11P6 Gene

Sources for RPS11P6 Gene

Content
Loading form....