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Aliases for RPS10P7 Gene

Aliases for RPS10P7 Gene

  • Ribosomal Protein S10 Pseudogene 7 2 3 5
  • RPS10_2_147 3

External Ids for RPS10P7 Gene

Previous GeneCards Identifiers for RPS10P7 Gene

  • GC01P199756
  • GC01P201487
  • GC01P172655

Summaries for RPS10P7 Gene

GeneCards Summary for RPS10P7 Gene

RPS10P7 (Ribosomal Protein S10 Pseudogene 7) is a Pseudogene.

Additional gene information for RPS10P7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS10P7 Gene

Genomics for RPS10P7 Gene

GeneHancer (GH) Regulatory Elements for RPS10P7 Gene

Promoters and enhancers for RPS10P7 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I201517 Enhancer 1 ENCODE dbSUPER 555.7 -0.8 -827 1.7 NCOA3 PKNOX1 ESRRA NFIB NEUROD1 SIN3A CEBPG ZBTB7B CTBP1 GATA3 RPS10P7 NAV1 PHLDA3 ENSG00000224818 ENSG00000235121 RNU6-501P ENSG00000236390 CSRP1 ENSG00000224536
GH01I201498 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.5 -15.6 -15562 10.2 PKNOX1 FOXA2 ZFP64 NEUROD1 SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 CSRP1 IPO9-AS1 ELF3-AS1 IPO9 RNPEP ENSG00000273478 DDX59 RPS10P7 NAV1 ENSG00000235121
GH01I201511 Enhancer 1.3 Ensembl ENCODE dbSUPER 17.9 -6.3 -6263 2.5 PKNOX1 ATF1 ARNT ARID4B YBX1 ZNF2 IRF4 ZNF143 ATF7 RUNX3 RPS10P7 PHLDA3 ENSG00000224818 ENSG00000236390 NAV1 CSRP1 ENSG00000224536
GH01I201488 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.8 -25.6 -25593 9.1 PKNOX1 FOXA2 ARID4B SIN3A BRCA1 YY1 ZNF143 ATF7 FOS DEK CSRP1 GC01P201494 GC01M201488 ENSG00000224818 NAV1 PHLDA3 LAD1 RPS10P7 LMOD1
GH01I201508 Enhancer 0.6 ENCODE dbSUPER 18.2 -9.6 -9594 1.3 SMARCA5 FOS CSRP1 ENSG00000224536 RPS10P7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS10P7 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPS10P7 gene promoter:

Genomic Locations for RPS10P7 Gene

Genomic Locations for RPS10P7 Gene
chr1:201,518,703-201,530,474
(GRCh38/hg38)
Size:
11,772 bases
Orientation:
Plus strand
chr1:201,487,831-201,499,602
(GRCh37/hg19)

Genomic View for RPS10P7 Gene

Genes around RPS10P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS10P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS10P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS10P7 Gene

Proteins for RPS10P7 Gene

Post-translational modifications for RPS10P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS10P7 Gene

Domains & Families for RPS10P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS10P7 Gene

Function for RPS10P7 Gene

Phenotypes From GWAS Catalog for RPS10P7 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS10P7 Gene

Localization for RPS10P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS10P7 Gene

Pathways & Interactions for RPS10P7 Gene

SuperPathways for RPS10P7 Gene

No Data Available

Interacting Proteins for RPS10P7 Gene

Gene Ontology (GO) - Biological Process for RPS10P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS10P7 Gene

Drugs & Compounds for RPS10P7 Gene

No Compound Related Data Available

Transcripts for RPS10P7 Gene

mRNA/cDNA for RPS10P7 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS10P7 Gene

Ribosomal protein S10 pseudogene 7:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS10P7 Gene

No ASD Table

Relevant External Links for RPS10P7 Gene

GeneLoc Exon Structure for
RPS10P7
ECgene alternative splicing isoforms for
RPS10P7

Expression for RPS10P7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS10P7 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS10P7 Gene:

RPS10P7

SOURCE GeneReport for Unigene cluster for RPS10P7 Gene:

Hs.605989
genes like me logo Genes that share expression patterns with RPS10P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS10P7 Gene

Orthologs for RPS10P7 Gene

Evolution for RPS10P7 Gene

ENSEMBL:
Gene Tree for RPS10P7 (if available)
TreeFam:
Gene Tree for RPS10P7 (if available)

No data available for Orthologs for RPS10P7 Gene

Paralogs for RPS10P7 Gene

No data available for Paralogs for RPS10P7 Gene

Variants for RPS10P7 Gene

Sequence variations from dbSNP and Humsavar for RPS10P7 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000866219 -- 201,519,598(+) G/A upstream_transcript_variant
rs1002374141 -- 201,519,722(+) A/C upstream_transcript_variant
rs1002428094 -- 201,519,917(+) A/C non_coding_transcript_variant
rs1002712564 -- 201,518,540(+) C/A upstream_transcript_variant
rs1002765064 -- 201,518,810(+) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPS10P7 Gene

Variant ID Type Subtype PubMed ID
nsv467961 CNV gain 19166990
nsv470776 CNV gain 18288195
nsv548997 CNV gain 21841781
nsv832315 CNV loss 17160897
nsv946575 CNV duplication 23825009
nsv947466 CNV duplication 23825009

Additional Variant Information for RPS10P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS10P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPS10P7 Gene

Disorders for RPS10P7 Gene

Additional Disease Information for RPS10P7

No disorders were found for RPS10P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS10P7 Gene

Publications for RPS10P7 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3 58
  3. Genome-wide association identifies the ABO blood group as a major locus associated with serum levels of soluble E-selectin. (PMID: 19729612) Paterson AD … Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications Research Group (Arteriosclerosis, thrombosis, and vascular biology 2009) 44 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPS10P7 Gene

Sources for RPS10P7 Gene

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