Aliases for RPP38-DT Gene

Subcategory (RNA class) for RPP38-DT Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for RPP38-DT Gene

  • RPP38 Divergent Transcript 2 3 5
  • Chromosome 10 Open Reading Frame 111 2
  • Uncharacterized Protein C10orf111 3
  • Lnc-NMT2-4 168
  • C10orf111 3
  • RPP38-DT 2

External Ids for RPP38-DT Gene

Previous HGNC Symbols for RPP38-DT Gene

  • C10orf111

Summaries for RPP38-DT Gene

GeneCards Summary for RPP38-DT Gene

RPP38-DT (RPP38 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RPP38-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPP38-DT Gene

Genomics for RPP38-DT Gene

GeneHancer (GH) Regulatory Elements for RPP38-DT Gene

Promoters and enhancers for RPP38-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPP38-DT on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for RPP38-DT

Genomic Locations for RPP38-DT Gene

Genomic Locations for RPP38-DT Gene
chr10:15,095,385-15,097,319
(GRCh38/hg38)
Size:
1,935 bases
Orientation:
Minus strand
chr10:15,137,384-15,139,318
(GRCh37/hg19)
Size:
1,935 bases
Orientation:
Minus strand

Genomic View for RPP38-DT Gene

Genes around RPP38-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPP38-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPP38-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPP38-DT Gene

Proteins for RPP38-DT Gene

Post-translational modifications for RPP38-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPP38-DT Gene

Domains & Families for RPP38-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPP38-DT Gene

Function for RPP38-DT Gene

Phenotypes From GWAS Catalog for RPP38-DT Gene

genes like me logo Genes that share phenotypes with RPP38-DT: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPP38-DT Gene

Localization for RPP38-DT Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPP38-DT gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for RPP38-DT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RPP38-DT: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for RPP38-DT Gene

Pathways & Interactions for RPP38-DT Gene

PathCards logo

SuperPathways for RPP38-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPP38-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPP38-DT Gene

Drugs & Compounds for RPP38-DT Gene

No Compound Related Data Available

Transcripts for RPP38-DT Gene

mRNA/cDNA for RPP38-DT Gene

1 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LNCipedia transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPP38-DT Gene

No ASD Table

Relevant External Links for RPP38-DT Gene

GeneLoc Exon Structure for
RPP38-DT

Expression for RPP38-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPP38-DT

SOURCE GeneReport for Unigene cluster for RPP38-DT Gene:

Hs.567777

Evidence on tissue expression from TISSUES for RPP38-DT Gene

  • Nervous system(4.2)
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPP38-DT Gene

Orthologs for RPP38-DT Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RPP38-DT Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10orf111 31
  • 97 (a)
OneToOne
Species where no ortholog for RPP38-DT was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPP38-DT Gene

ENSEMBL:
Gene Tree for RPP38-DT (if available)
TreeFam:
Gene Tree for RPP38-DT (if available)

Paralogs for RPP38-DT Gene

No data available for Paralogs for RPP38-DT Gene

Variants for RPP38-DT Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for RPP38-DT Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs7896053 - p.Arg70Lys

Additional dbSNP identifiers (rs#s) for RPP38-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for RPP38-DT Gene

Variant ID Type Subtype PubMed ID
nsv831794 CNV loss 17160897

Variation tolerance for RPP38-DT Gene

Residual Variation Intolerance Score: 71.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.76; 66.54% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RPP38-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPP38-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPP38-DT Gene

Disorders for RPP38-DT Gene

No disorders were found for RPP38-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPP38-DT Gene

Publications for RPP38-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 54
  3. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 54

No data available for Mastermind for RPP38-DT Gene

Products for RPP38-DT Gene

Sources for RPP38-DT Gene