Aliases for RPP38-DT Gene

Subcategory (RNA class) for RPP38-DT Gene

lncRNA

Aliases for RPP38-DT Gene

External Ids for RPP38-DT Gene

Previous HGNC Symbols for RPP38-DT Gene

  • C10orf111

Summaries for RPP38-DT Gene

GeneCards Summary for RPP38-DT Gene

RPP38-DT (RPP38 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RPP38-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPP38-DT Gene

Genomics for RPP38-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPP38-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPP38-DT on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for RPP38-DT

Genomic Locations for RPP38-DT Gene

Latest Assembly
chr10:15,095,384-15,097,319
(GRCh38/hg38)
Size:
1,936 bases
Orientation:
Minus strand

Previous Assembly
chr10:15,137,384-15,139,318
(GRCh37/hg19 by Entrez Gene)
Size:
1,935 bases
Orientation:
Minus strand

chr10:15,137,384-15,139,318
(GRCh37/hg19 by Ensembl)
Size:
1,935 bases
Orientation:
Minus strand

Genomic View for RPP38-DT Gene

Genes around RPP38-DT on UCSC Golden Path with GeneCards custom track
RPP38-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
RPP38-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPP38-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPP38-DT Gene

Proteins for RPP38-DT Gene

  • Protein details for RPP38-DT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N326-CJ111_HUMAN
    Recommended name:
    Putative uncharacterized protein RPP38-DT
    Protein Accession:
    Q8N326
    Secondary Accessions:
    • B2RAC4

    Protein attributes for RPP38-DT Gene

    Size:
    155 amino acids
    Molecular mass:
    17766 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPP38-DT Gene

Post-translational modifications for RPP38-DT Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for RPP38-DT Gene

Domains & Families for RPP38-DT Gene

Gene Families for RPP38-DT Gene

Protein Domains for RPP38-DT Gene

ProtoNet:
genes like me logo Genes that share domains with RPP38-DT: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPP38-DT Gene

Function for RPP38-DT Gene

Phenotypes From GWAS Catalog for RPP38-DT Gene

genes like me logo Genes that share phenotypes with RPP38-DT: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPP38-DT Gene

Localization for RPP38-DT Gene

Subcellular locations from UniProtKB/Swiss-Prot for RPP38-DT Gene

Membrane. Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPP38-DT gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for RPP38-DT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with RPP38-DT: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for RPP38-DT Gene

Pathways & Interactions for RPP38-DT Gene

PathCards logo

SuperPathways for RPP38-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPP38-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPP38-DT Gene

Drugs & Compounds for RPP38-DT Gene

No Compound Related Data Available

Transcripts for RPP38-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RPP38-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007DCF59_9606 lncRNA 1716 3

RefSeq: NR_160789,

Ensembl: ENST00000624760 (view in UCSC) ,

LNCipedia: lnc-NMT2-4:1,

RPP38-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RPP38-DT Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for RPP38-DT

Alternative Splicing Database (ASD) splice patterns (SP) for RPP38-DT Gene

No ASD Table

Relevant External Links for RPP38-DT Gene

GeneLoc Exon Structure for
RPP38-DT

Expression for RPP38-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPP38-DT

SOURCE GeneReport for Unigene cluster for RPP38-DT Gene:

Hs.567777

Evidence on tissue expression from TISSUES for RPP38-DT Gene

  • Nervous system(4.2)
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPP38-DT Gene

Orthologs for RPP38-DT Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for RPP38-DT Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C10orf111 31
  • 97 (a)
OneToOne
Species where no ortholog for RPP38-DT was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RPP38-DT Gene

ENSEMBL:
Gene Tree for RPP38-DT (if available)
TreeFam:
Gene Tree for RPP38-DT (if available)

Paralogs for RPP38-DT Gene

No data available for Paralogs for RPP38-DT Gene

Variants for RPP38-DT Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for RPP38-DT Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs7896053 - p.Arg70Lys

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for RPP38-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for RPP38-DT Gene

Variant ID Type Subtype PubMed ID
nsv831794 CNV loss 17160897

Variation tolerance for RPP38-DT Gene

Residual Variation Intolerance Score: 71.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.76; 66.54% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RPP38-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPP38-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPP38-DT Gene

Disorders for RPP38-DT Gene

Additional Disease Information for RPP38-DT

No disorders were found for RPP38-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPP38-DT Gene

Publications for RPP38-DT Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P … Rogers J (Nature 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4

No data available for Mastermind for RPP38-DT Gene

Products for RPP38-DT Gene

Sources for RPP38-DT Gene