RPLP0P5 Gene (Pseudogene)

Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 5

GC01M220316
GIFtS:
6
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Aliases for RPLP0P5 Gene

Aliases for RPLP0P5 Gene

  • Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 5 2 3
  • Ribosomal Protein, Large, P0 Pseudogene 5 2 3
  • Ribosomal Protein, Large, P0 (RPLP0) Pseudogene 5
  • RPLP0_1_167 3
  • AL451081.2 5

External Ids for RPLP0P5 Gene

Previous GeneCards Identifiers for RPLP0P5 Gene

  • GC01M218557
  • GC01M220489

Summaries for RPLP0P5 Gene

GeneCards Summary for RPLP0P5 Gene

RPLP0P5 (Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 5) is a Pseudogene.

Additional gene information for RPLP0P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPLP0P5 Gene

Genomics for RPLP0P5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPLP0P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J220336 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -20.3 -20322 4.4 CREB1 CTCF PRDM10 ZNF629 TARDBP FOXA1 ZIC2 POLR2A ZNF600 ZNF148 RAB3GAP2 C1orf115 RPLP0P5 ENSG00000226927 MARK1
GH01J220325 Enhancer 0.5 Ensembl 0.4 -8.3 -8322 1.6 POLR2A ZIC2 JUND TCF12 FOS RPLP0P5 ENSG00000226927 RAB3GAP2 MARK1
GH01J220347 Enhancer 0.4 Ensembl 0.3 -30.2 -30222 0.6 PRDM1 OSR2 NFIC FEZF1 ENSG00000226927 RPLP0P5 RAB3GAP2 MARK1
GH01J220353 Enhancer 0.3 Ensembl 0.3 -35.8 -35822 0.6 CTCF RAD21 ENSG00000226927 RPLP0P5 RAB3GAP2 MARK1
GH01J220329 Enhancer 0.2 Ensembl 0.4 -11.7 -11722 0.4 RPLP0P5 ENSG00000226927 RAB3GAP2 MARK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPLP0P5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPLP0P5 Gene

Genomic Locations for RPLP0P5 Gene
chr1:220,316,595-220,317,679
(GRCh38/hg38)
Size:
1,085 bases
Orientation:
Minus strand
chr1:220,489,937-220,491,025
(GRCh37/hg19)
Size:
1,089 bases
Orientation:
Minus strand

Genomic View for RPLP0P5 Gene

Genes around RPLP0P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPLP0P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPLP0P5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPLP0P5 Gene

Proteins for RPLP0P5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPLP0P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPLP0P5 Gene

Domains & Families for RPLP0P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPLP0P5 Gene

Function for RPLP0P5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPLP0P5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPLP0P5 Gene

Localization for RPLP0P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPLP0P5 Gene

Pathways & Interactions for RPLP0P5 Gene

PathCards logo

SuperPathways for RPLP0P5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPLP0P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPLP0P5 Gene

Drugs & Compounds for RPLP0P5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPLP0P5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPLP0P5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPLP0P5 Gene

No ASD Table

Relevant External Links for RPLP0P5 Gene

GeneLoc Exon Structure for
RPLP0P5

Expression for RPLP0P5 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPLP0P5 Gene

mRNA expression in normal human tissues for RPLP0P5 Gene
mRNA expression by GTEx for RPLP0P5 Gene
genes like me logo Genes that share expression patterns with RPLP0P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPLP0P5 Gene

Orthologs for RPLP0P5 Gene

Evolution for RPLP0P5 Gene

ENSEMBL:
Gene Tree for RPLP0P5 (if available)
TreeFam:
Gene Tree for RPLP0P5 (if available)

No data available for Orthologs for RPLP0P5 Gene

Paralogs for RPLP0P5 Gene

No data available for Paralogs for RPLP0P5 Gene

Variants for RPLP0P5 Gene

Additional Variant Information for RPLP0P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPLP0P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPLP0P5 Gene

Disorders for RPLP0P5 Gene

Additional Disease Information for RPLP0P5

Genetic Association Database
(GAD)

No disorders were found for RPLP0P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPLP0P5 Gene

Publications for RPLP0P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genome-wide association study in bipolar patients stratified by co-morbidity. (PMID: 22205951) Kerner B … Muthén BO (PloS one 2011) 41
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 41

ExternalLinks

View latest publications for RPLP0P5 gene in Mastermind

Products for RPLP0P5 Gene

Sources for RPLP0P5 Gene