RPLP0P2 Gene (Pseudogene)

Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 2

GC11P061633
GIFtS:
17

Aliases for RPLP0P2 Gene

Aliases for RPLP0P2 Gene

  • Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 2 2 3 5
  • Ribosomal Protein, Large, P0 Pseudogene 2 2 3
  • Ribosomal Protein P0 Pseudogene 2 3
  • RPLP0_3_1146 3
  • RPLP0L2 3

External Ids for RPLP0P2 Gene

Previous GeneCards Identifiers for RPLP0P2 Gene

  • GC11P063917
  • GC11P062958
  • GC11P061167
  • GC11P061157
  • GC11P061139
  • GC11P061382
  • GC11P057710

Summaries for RPLP0P2 Gene

GeneCards Summary for RPLP0P2 Gene

RPLP0P2 (Ribosomal Protein Lateral Stalk Subunit P0 Pseudogene 2) is a Pseudogene. Diseases associated with RPLP0P2 include Lung Cancer Susceptibility 3.

Additional gene information for RPLP0P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPLP0P2 Gene

Genomics for RPLP0P2 Gene

GeneHancer (GH) Regulatory Elements for RPLP0P2 Gene

Promoters and enhancers for RPLP0P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J061612 Enhancer 0.5 Ensembl 750.6 0.0 -35 1.2 PRDM10 ZNF766 ZFHX2 CEBPG ZNF24 RPLP0P2 LOC101927495
GH11J061616 Enhancer 0.3 Ensembl 750.6 +1.9 1865 1.4 EP300 CEBPG RPLP0P2 LM611511-003
GH11J062417 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 6.5 +804.3 804251 2.7 L3MBTL2 TEAD4 SP7 ZSCAN21 SMARCA4 IKZF1 PKNOX1 PRDM10 ZEB2 ZNF629 SCGB1A1 ASRGL1 RPLP0P2 INCENP hsa-miR-5095-063 LOC102723765
GH11J061608 Enhancer 1.1 Ensembl ENCODE 0.6 -4.8 -4835 3.6 MLX RBPJ NR2F6 ATF1 CREB1 MIXL1 RERE ELF3 SP1 CEBPG SYT7 DAGLA TMEM216 RPLP0P2 LOC101927495
GH11J061598 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 0.4 -13.7 -13736 5.8 SMARCE1 DACH1 MNT TEAD4 SP1 ZNF148 RERE CBFA2T2 SMARCA4 PPARG TMEM132A DAGLA MYRF MYRF-AS1 ENSG00000256196 SDHAF2 ENSG00000250230 RPLP0P2 LOC101927495
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPLP0P2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPLP0P2 gene promoter:
  • AP-1
  • Arnt
  • C/EBPalpha
  • E2F
  • Egr-3
  • FOXD1
  • S8
  • STAT1
  • STAT1alpha
  • STAT1beta

Genomic Locations for RPLP0P2 Gene

Genomic Locations for RPLP0P2 Gene
chr11:61,615,036-61,639,449
(GRCh38/hg38)
Size:
24,414 bases
Orientation:
Plus strand
chr11:61,382,508-61,406,921
(GRCh37/hg19)
Size:
24,414 bases
Orientation:
Plus strand

Genomic View for RPLP0P2 Gene

Genes around RPLP0P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPLP0P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPLP0P2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPLP0P2 Gene

Proteins for RPLP0P2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPLP0P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPLP0P2 Gene

Domains & Families for RPLP0P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPLP0P2 Gene

Function for RPLP0P2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPLP0P2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPLP0P2 Gene

Localization for RPLP0P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPLP0P2 Gene

Pathways & Interactions for RPLP0P2 Gene

PathCards logo

SuperPathways for RPLP0P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPLP0P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPLP0P2 Gene

Drugs & Compounds for RPLP0P2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPLP0P2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPLP0P2 Gene

(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPLP0P2 Gene

No ASD Table

Relevant External Links for RPLP0P2 Gene

GeneLoc Exon Structure for
RPLP0P2
ECgene alternative splicing isoforms for
RPLP0P2

Expression for RPLP0P2 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPLP0P2 Gene

mRNA expression in normal human tissues for RPLP0P2 Gene
mRNA expression by GTEx for RPLP0P2 Gene

mRNA differential expression in normal tissues according to GTEx for RPLP0P2 Gene

This gene is overexpressed in Prostate (x6.0).

NURSA nuclear receptor signaling pathways regulating expression of RPLP0P2 Gene:

RPLP0P2

SOURCE GeneReport for Unigene cluster for RPLP0P2 Gene:

Hs.502733
genes like me logo Genes that share expression patterns with RPLP0P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPLP0P2 Gene

Orthologs for RPLP0P2 Gene

Evolution for RPLP0P2 Gene

ENSEMBL:
Gene Tree for RPLP0P2 (if available)
TreeFam:
Gene Tree for RPLP0P2 (if available)

No data available for Orthologs for RPLP0P2 Gene

Paralogs for RPLP0P2 Gene

No data available for Paralogs for RPLP0P2 Gene

Variants for RPLP0P2 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for RPLP0P2 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000007876 -- 61,630,839(+) G/A intron_variant
rs1000025686 -- 61,624,266(+) A/G intron_variant
rs1000071394 -- 61,635,157(+) G/A intron_variant
rs1000102108 -- 61,635,431(+) A/G intron_variant
rs1000597273 -- 61,639,581(+) G/A/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPLP0P2 Gene

Variant ID Type Subtype PubMed ID
nsv832179 CNV loss 17160897
nsv983030 CNV duplication 23825009

Additional Variant Information for RPLP0P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPLP0P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPLP0P2 Gene

Disorders for RPLP0P2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for RPLP0P2 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for RPLP0P2

Genetic Association Database
(GAD)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with RPLP0P2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RPLP0P2 Gene

Publications for RPLP0P2 Gene

  1. Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis. (PMID: 25089627) Xu G … Wang Y (PloS one 2014) 2 3 56
  2. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 56
  3. Low expression lncRNA RPLP0P2 is associated with poor prognosis and decreased cell proliferation and adhesion ability in lung adenocarcinoma. (PMID: 27460542) Chen J … Wang Y (Oncology reports 2016) 3 56
  4. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3 56
  5. Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. (PMID: 21829377) Lemaitre RN … Steffen LM (PLoS genetics 2011) 43 56

ExternalLinks

View latest publications for RPLP0P2 gene in Mastermind

Products for RPLP0P2 Gene

Sources for RPLP0P2 Gene