Aliases for RPL9P17 Gene

Aliases for RPL9P17 Gene

  • Ribosomal Protein L9 Pseudogene 17 2 3
  • Ribosomal Protein L9 (RPL9) Pseudogene 5
  • RPL9_5_548 3
  • AC010469.1 5

External Ids for RPL9P17 Gene

Previous GeneCards Identifiers for RPL9P17 Gene

  • GC05M031860
  • GC05M031824
  • GC05M031826
  • GC05M031828
  • GC05M031833
  • GC05M031836
  • GC05M031839
  • GC05M031851
  • GC05M031830

Summaries for RPL9P17 Gene

GeneCards Summary for RPL9P17 Gene

RPL9P17 (Ribosomal Protein L9 Pseudogene 17) is a Pseudogene.

Additional gene information for RPL9P17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL9P17 Gene

Genomics for RPL9P17 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL9P17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J031800 Enhancer 0.2 ENCODE 12.8 +22.6 22611 1.1 RPL9P17 RNU6-760P PDZD2 piR-61945-402 RF00026-823 RNU6-358P RF00017-4097 RF00017-4094 GOLPH3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL9P17 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL9P17 Gene

Latest Assembly
chr5:31,822,460-31,823,164
(GRCh38/hg38)
Size:
705 bases
Orientation:
Minus strand

Previous Assembly
chr5:31,822,567-31,823,271
(GRCh37/hg19 by Entrez Gene)
Size:
705 bases
Orientation:
Minus strand

chr5:31,822,668-31,823,243
(GRCh37/hg19 by Ensembl)
Size:
576 bases
Orientation:
Minus strand

Genomic View for RPL9P17 Gene

Genes around RPL9P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL9P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL9P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL9P17 Gene

Proteins for RPL9P17 Gene

Post-translational modifications for RPL9P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL9P17 Gene

Domains & Families for RPL9P17 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL9P17 Gene

Function for RPL9P17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL9P17 Gene

Localization for RPL9P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL9P17 Gene

Pathways & Interactions for RPL9P17 Gene

PathCards logo

SuperPathways for RPL9P17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL9P17 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL9P17 Gene

Drugs & Compounds for RPL9P17 Gene

No Compound Related Data Available

Transcripts for RPL9P17 Gene

mRNA/cDNA for RPL9P17 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL9P17 Gene

No ASD Table

Relevant External Links for RPL9P17 Gene

GeneLoc Exon Structure for
RPL9P17

Expression for RPL9P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL9P17 Gene

mRNA differential expression in normal tissues according to GTEx for RPL9P17 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x8.7), Brain - Caudate (basal ganglia) (x6.4), Brain - Nucleus accumbens (basal ganglia) (x4.3), Brain - Frontal Cortex (BA9) (x4.2), and Heart - Left Ventricle (x4.0).
genes like me logo Genes that share expression patterns with RPL9P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL9P17 Gene

Orthologs for RPL9P17 Gene

Evolution for RPL9P17 Gene

ENSEMBL:
Gene Tree for RPL9P17 (if available)
TreeFam:
Gene Tree for RPL9P17 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL9P17

No data available for Orthologs for RPL9P17 Gene

Paralogs for RPL9P17 Gene

No data available for Paralogs for RPL9P17 Gene

Variants for RPL9P17 Gene

Additional Variant Information for RPL9P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL9P17
Leiden Open Variation Database (LOVD)
RPL9P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL9P17 Gene

Disorders for RPL9P17 Gene

No disorders were found for RPL9P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL9P17 Gene

Publications for RPL9P17 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL9P17 Gene

Products for RPL9P17 Gene

Sources for RPL9P17 Gene