Aliases for RPL7AP9 Gene

Aliases for RPL7AP9 Gene

  • Ribosomal Protein L7a Pseudogene 9 2 3 5
  • Ribosomal Protein L7a Pseudogene 59 2 3
  • RPL7A_24_1258 3
  • RPL7AP59 3
  • RPL7AP9 5
  • RpL7a 3

External Ids for RPL7AP9 Gene

Previous HGNC Symbols for RPL7AP9 Gene

  • RPL7AP59

Previous GeneCards Identifiers for RPL7AP9 Gene

  • GC12U900530
  • GC12P075519
  • GC12P076994

Summaries for RPL7AP9 Gene

GeneCards Summary for RPL7AP9 Gene

RPL7AP9 (Ribosomal Protein L7a Pseudogene 9) is a Pseudogene.

Additional gene information for RPL7AP9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL7AP9 Gene

Genomics for RPL7AP9 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL7AP9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J076588 Enhancer 0.7 FANTOM5 ENCODE 0.4 -10.5 -10490 1.5 MYC ATF4 CEBPB SPI1 CEBPG OSBPL8 lnc-ZDHHC17-11 ENSG00000287030 RPL7AP9 HSALNG0092551 LOC105369850 ENSG00000257526 ZDHHC17
GH12J076586 Enhancer 0.5 ENCODE 0.4 -12.7 -12676 0.2 ZNF654 CTCF REST TRIM22 RAD21 SMC3 HLF GATAD2B lnc-ZDHHC17-11 BBS10 RPL7AP9 OSBPL8 HSALNG0092551 LOC105369850 ENSG00000257526 ZDHHC17
GH12J076596 Enhancer 0.3 Ensembl 0.7 -2.8 -2751 0.6 ZSCAN5C OSBPL8 ENSG00000287030 RPL7AP9 lnc-ZDHHC17-11 LOC105369850 ENSG00000257526 HSALNG0092551 ZDHHC17
GH12J076590 Enhancer 0.4 FANTOM5 0.4 -9.4 -9377 0.2 ATF2 ATF7 OSBPL8 lnc-ZDHHC17-11 RPL7AP9 ENSG00000287030 LOC105369850 ENSG00000257526 HSALNG0092551 ZDHHC17
GH12J076594 Enhancer 0.2 Ensembl 0.7 -4.3 -4251 1.6 OSBPL8 RPL7AP9 ENSG00000287030 lnc-ZDHHC17-11 LOC105369850 ENSG00000257526 HSALNG0092551 ZDHHC17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL7AP9 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL7AP9 Gene

Latest Assembly
chr12:76,599,652-76,600,530
(GRCh38/hg38)
Size:
879 bases
Orientation:
Plus strand

Previous Assembly
chr12:76,993,432-76,994,310
(GRCh37/hg19 by Entrez Gene)
Size:
879 bases
Orientation:
Plus strand

chr12:76,993,451-76,994,250
(GRCh37/hg19 by Ensembl)
Size:
800 bases
Orientation:
Plus strand

Genomic View for RPL7AP9 Gene

Genes around RPL7AP9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL7AP9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL7AP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL7AP9 Gene

Proteins for RPL7AP9 Gene

Post-translational modifications for RPL7AP9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL7AP9 Gene

Domains & Families for RPL7AP9 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL7AP9 Gene

Function for RPL7AP9 Gene

Phenotypes From GWAS Catalog for RPL7AP9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL7AP9 Gene

Localization for RPL7AP9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL7AP9 Gene

Pathways & Interactions for RPL7AP9 Gene

PathCards logo

SuperPathways for RPL7AP9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL7AP9 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL7AP9 Gene

Drugs & Compounds for RPL7AP9 Gene

No Compound Related Data Available

Transcripts for RPL7AP9 Gene

mRNA/cDNA for RPL7AP9 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL7AP9 Gene

No ASD Table

Relevant External Links for RPL7AP9 Gene

GeneLoc Exon Structure for
RPL7AP9

Expression for RPL7AP9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL7AP9 Gene

mRNA differential expression in normal tissues according to GTEx for RPL7AP9 Gene

This gene is overexpressed in Testis (x6.9).
genes like me logo Genes that share expression patterns with RPL7AP9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL7AP9 Gene

Orthologs for RPL7AP9 Gene

Evolution for RPL7AP9 Gene

ENSEMBL:
Gene Tree for RPL7AP9 (if available)
TreeFam:
Gene Tree for RPL7AP9 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL7AP9

No data available for Orthologs for RPL7AP9 Gene

Paralogs for RPL7AP9 Gene

No data available for Paralogs for RPL7AP9 Gene

Variants for RPL7AP9 Gene

Additional Variant Information for RPL7AP9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL7AP9
Leiden Open Variation Database (LOVD)
RPL7AP9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL7AP9 Gene

Disorders for RPL7AP9 Gene

No disorders were found for RPL7AP9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL7AP9 Gene

Publications for RPL7AP9 Gene

  1. Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production. (PMID: 21408207) Chung SA … Criswell LA (PLoS genetics 2011) 3 40
  2. Human L7a ribosomal protein: sequence, structural organization, and expression of a functional gene. (PMID: 8482538) De Falco S … Pietropaolo C (Gene 1993) 2 3
  3. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett EJ … Harper JW (Cell 2010) 3
  4. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 3

Products for RPL7AP9 Gene

Sources for RPL7AP9 Gene