Aliases for RPL7AP54 Gene

Aliases for RPL7AP54 Gene

  • Ribosomal Protein L7a Pseudogene 54 2 3
  • Ribosomal Protein L7a (RPL7A) Pseudogene 5
  • RPL7A_22_1161 3
  • AP000893.1 5

External Ids for RPL7AP54 Gene

Previous GeneCards Identifiers for RPL7AP54 Gene

  • GC11P082347
  • GC11P082669

Summaries for RPL7AP54 Gene

GeneCards Summary for RPL7AP54 Gene

RPL7AP54 (Ribosomal Protein L7a Pseudogene 54) is a Pseudogene.

Additional gene information for RPL7AP54 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL7AP54 Gene

Genomics for RPL7AP54 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL7AP54 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J082955 Enhancer 0.7 ENCODE 250.7 -1.3 -1256 1.5 ZSCAN16 NONO ZIC2 KDM6A FOXA2 RARA BCL6 PRDM10 SOX5 FOXK2 RPL7AP54 DDIAS RAB30 RAB30-DT ENSG00000254698 SNORA70E ENSG00000254522 PRCP piR-48369-033
GH11J082959 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 +3.1 3099 2.1 BCL11A FEZF1 ZIC2 TRIM22 IRF4 EBF1 CBFB ELF1 NFATC1 IKZF1 DDIAS RAB30-DT RAB30 ENSG00000254698 SNORA70E ENSG00000254522 PRCP RPL7AP54
GH11J082969 Enhancer 0.9 ENCODE dbSUPER 0.4 +12.5 12482 1.1 SP1 BCL11A IRF4 TRIM22 CBFB BHLHE40 ZNF24 ELF1 NFATC1 IKZF1 PRCP DDIAS RAB30 ENSG00000254698 ENSG00000254522 SNORA70E RPL7AP54
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL7AP54 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL7AP54 Gene

Latest Assembly
chr11:82,957,392-82,958,274
(GRCh38/hg38)
Size:
883 bases
Orientation:
Plus strand

Previous Assembly
chr11:82,668,434-82,669,316
(GRCh37/hg19 by Entrez Gene)
Size:
883 bases
Orientation:
Plus strand

chr11:82,668,465-82,669,258
(GRCh37/hg19 by Ensembl)
Size:
794 bases
Orientation:
Plus strand

Genomic View for RPL7AP54 Gene

Genes around RPL7AP54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL7AP54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL7AP54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL7AP54 Gene

Proteins for RPL7AP54 Gene

Post-translational modifications for RPL7AP54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL7AP54 Gene

Domains & Families for RPL7AP54 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL7AP54 Gene

Function for RPL7AP54 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL7AP54 Gene

Localization for RPL7AP54 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL7AP54 Gene

Pathways & Interactions for RPL7AP54 Gene

PathCards logo

SuperPathways for RPL7AP54 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL7AP54 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL7AP54 Gene

Drugs & Compounds for RPL7AP54 Gene

No Compound Related Data Available

Transcripts for RPL7AP54 Gene

mRNA/cDNA for RPL7AP54 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL7AP54 Gene

No ASD Table

Relevant External Links for RPL7AP54 Gene

GeneLoc Exon Structure for
RPL7AP54

Expression for RPL7AP54 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL7AP54 Gene

Orthologs for RPL7AP54 Gene

Evolution for RPL7AP54 Gene

ENSEMBL:
Gene Tree for RPL7AP54 (if available)
TreeFam:
Gene Tree for RPL7AP54 (if available)

No data available for Orthologs for RPL7AP54 Gene

Paralogs for RPL7AP54 Gene

No data available for Paralogs for RPL7AP54 Gene

Variants for RPL7AP54 Gene

Additional Variant Information for RPL7AP54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL7AP54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL7AP54 Gene

Disorders for RPL7AP54 Gene

No disorders were found for RPL7AP54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL7AP54 Gene

Publications for RPL7AP54 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL7AP54 Gene

Products for RPL7AP54 Gene

Sources for RPL7AP54 Gene