Aliases for RPL7AP48 Gene

Aliases for RPL7AP48 Gene

  • Ribosomal Protein L7a Pseudogene 48 2 3
  • Ribosomal Protein L7a (RPL7A) Pseudogene 5
  • RPL7A_14_968 3
  • AL163193.1 5

External Ids for RPL7AP48 Gene

Previous GeneCards Identifiers for RPL7AP48 Gene

  • GC09U901224

Summaries for RPL7AP48 Gene

GeneCards Summary for RPL7AP48 Gene

RPL7AP48 (Ribosomal Protein L7a Pseudogene 48) is a Pseudogene.

Additional gene information for RPL7AP48 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL7AP48 Gene

Genomics for RPL7AP48 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL7AP48 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J020532 Enhancer 0.2 FANTOM5 600.7 -0.1 -60 0.1 RPL7AP48 MLLT3 MIR4474 SLC24A2
GH09J020533 Enhancer 0.2 Ensembl 600.7 +0.4 375 0.6 RPL7AP48 piR-32023-251 MLLT3 SLC24A2
GH09J020526 Enhancer 0.7 Ensembl 0.7 -3.8 -3825 5 TEAD4 PKNOX1 CEBPA SOX13 CTCF ARID3A RELB RUNX3 ELF1 BATF RPL7AP48 MIR4474 MLLT3 SLC24A2
GH09J020511 Enhancer 0.8 Ensembl ENCODE 0.4 -18.6 -18626 5 PRDM10 ZNF600 SP1 ZNF23 ZBTB17 EP300 STAT1 RCOR1 MAFK NR2C2 MLLT3 MIR4474 RPL7AP48 SLC24A2
GH09J020505 Enhancer 0.8 Ensembl ENCODE 0.3 -25.4 -25353 6.3 FOXA1 PRDM1 SCRT2 CEBPB DPF2 CTBP1 ZSCAN5C OSR2 ZBTB17 WT1 MIR4474 RPL7AP48 MLLT3 SLC24A2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL7AP48 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL7AP48 Gene

Genomic Locations for RPL7AP48 Gene
chr9:20,532,526-20,533,399
(GRCh38/hg38)
Size:
874 bases
Orientation:
Plus strand
chr9:20,532,524-20,533,396
(GRCh37/hg19)
Size:
873 bases
Orientation:
Plus strand

Genomic View for RPL7AP48 Gene

Genes around RPL7AP48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL7AP48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL7AP48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL7AP48 Gene

Proteins for RPL7AP48 Gene

Post-translational modifications for RPL7AP48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL7AP48 Gene

Domains & Families for RPL7AP48 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL7AP48 Gene

Function for RPL7AP48 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL7AP48 Gene

Localization for RPL7AP48 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL7AP48 Gene

Pathways & Interactions for RPL7AP48 Gene

PathCards logo

SuperPathways for RPL7AP48 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL7AP48 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL7AP48 Gene

Drugs & Compounds for RPL7AP48 Gene

No Compound Related Data Available

Transcripts for RPL7AP48 Gene

mRNA/cDNA for RPL7AP48 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL7AP48 Gene

No ASD Table

Relevant External Links for RPL7AP48 Gene

GeneLoc Exon Structure for
RPL7AP48

Expression for RPL7AP48 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL7AP48 Gene

genes like me logo Genes that share expression patterns with RPL7AP48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL7AP48 Gene

Orthologs for RPL7AP48 Gene

Evolution for RPL7AP48 Gene

ENSEMBL:
Gene Tree for RPL7AP48 (if available)
TreeFam:
Gene Tree for RPL7AP48 (if available)

No data available for Orthologs for RPL7AP48 Gene

Paralogs for RPL7AP48 Gene

No data available for Paralogs for RPL7AP48 Gene

Variants for RPL7AP48 Gene

Additional Variant Information for RPL7AP48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL7AP48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL7AP48 Gene

Disorders for RPL7AP48 Gene

Additional Disease Information for RPL7AP48

Genetic Association Database
(GAD)

No disorders were found for RPL7AP48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL7AP48 Gene

Publications for RPL7AP48 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 41

No data available for Mastermind for RPL7AP48 Gene

Products for RPL7AP48 Gene

Sources for RPL7AP48 Gene