Aliases for RPL7AP47 Gene

Aliases for RPL7AP47 Gene

  • Ribosomal Protein L7a Pseudogene 47 2 3
  • Ribosomal Protein L7a (RPL7A) Pseudogene 5
  • RPL7A_13_964 3
  • AL441963.1 5

External Ids for RPL7AP47 Gene

Previous GeneCards Identifiers for RPL7AP47 Gene

  • GC09U901239

Summaries for RPL7AP47 Gene

GeneCards Summary for RPL7AP47 Gene

RPL7AP47 (Ribosomal Protein L7a Pseudogene 47) is a Pseudogene.

Additional gene information for RPL7AP47 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL7AP47 Gene

Genomics for RPL7AP47 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL7AP47 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J014203 Promoter/Enhancer 1.5 UCNEbase Ensembl ENCODE dbSUPER 250.7 -0.6 -573 1.2 YY1 FEZF1 MAFF FOXA2 RXRA ZNF316 ZBTB33 ZNF843 MAFK JUND RPL7AP47 HSALNG0070085 NFIB MPDZ
GH09J014205 Enhancer 0.6 ENCODE dbSUPER 250.7 +1.8 1757 1.4 JUND CEBPB EP300 MAFK ZNF362 POLR2A RPL7AP47 ENSG00000225472 NFIB MPDZ
GH09J014209 Enhancer 1.7 UCNEbase FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.0 8983 8.8 ZNF600 JUND ZNF580 ATF2 NFIC ZIC2 CEBPB FEZF1 ZNF341 ZNF610 CDCA4P1 ZDHHC21 NFIB RPL7AP47 ENSG00000225472 MPDZ
GH09J014197 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.4 -4417 4.4 YY1 MAFF RXRA ZNF316 MAFK MAFG RAD21 MAX CHD2 ZBTB17 RPL7AP47 HSALNG0070085 NFIB MPDZ
GH09J014178 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 0.4 -23.5 -23515 3.9 YY1 FOXA2 RXRA ZBTB33 JUND SOX5 HNF4A ZNF398 REST MAX NFIB RPL7AP47 HSALNG0070085 MPDZ
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL7AP47 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL7AP47 Gene

Latest Assembly
chr9:14,204,218-14,205,095
(GRCh38/hg38)
Size:
878 bases
Orientation:
Plus strand

Previous Assembly
chr9:14,204,217-14,205,094
(GRCh37/hg19 by Entrez Gene)
Size:
878 bases
Orientation:
Plus strand

chr9:14,204,247-14,205,038
(GRCh37/hg19 by Ensembl)
Size:
792 bases
Orientation:
Plus strand

Genomic View for RPL7AP47 Gene

Genes around RPL7AP47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL7AP47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL7AP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL7AP47 Gene

Proteins for RPL7AP47 Gene

Post-translational modifications for RPL7AP47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL7AP47 Gene

Domains & Families for RPL7AP47 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL7AP47 Gene

Function for RPL7AP47 Gene

Phenotypes From GWAS Catalog for RPL7AP47 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL7AP47 Gene

Localization for RPL7AP47 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL7AP47 Gene

Pathways & Interactions for RPL7AP47 Gene

PathCards logo

SuperPathways for RPL7AP47 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL7AP47 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL7AP47 Gene

Drugs & Compounds for RPL7AP47 Gene

No Compound Related Data Available

Transcripts for RPL7AP47 Gene

mRNA/cDNA for RPL7AP47 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL7AP47 Gene

No ASD Table

Relevant External Links for RPL7AP47 Gene

GeneLoc Exon Structure for
RPL7AP47

Expression for RPL7AP47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL7AP47 Gene

mRNA differential expression in normal tissues according to GTEx for RPL7AP47 Gene

This gene is overexpressed in Testis (x4.6).
genes like me logo Genes that share expression patterns with RPL7AP47: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL7AP47 Gene

Orthologs for RPL7AP47 Gene

Evolution for RPL7AP47 Gene

ENSEMBL:
Gene Tree for RPL7AP47 (if available)
TreeFam:
Gene Tree for RPL7AP47 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL7AP47

No data available for Orthologs for RPL7AP47 Gene

Paralogs for RPL7AP47 Gene

No data available for Paralogs for RPL7AP47 Gene

Variants for RPL7AP47 Gene

Additional Variant Information for RPL7AP47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL7AP47
Leiden Open Variation Database (LOVD)
RPL7AP47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL7AP47 Gene

Disorders for RPL7AP47 Gene

No disorders were found for RPL7AP47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL7AP47 Gene

Publications for RPL7AP47 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Novel associations for hypothyroidism include known autoimmune risk loci. (PMID: 22493691) Eriksson N … Do CB (PloS one 2012) 40
  3. Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03). (PMID: 19754311) Le Clerc S … Zagury JF (The Journal of infectious diseases 2009) 40

No data available for Mastermind for RPL7AP47 Gene

Products for RPL7AP47 Gene

Sources for RPL7AP47 Gene