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Aliases for RPL6P5 Gene

Subcategory (RNA class) for RPL6P5 Gene

lncRNA

Aliases for RPL6P5 Gene

  • Ribosomal Protein L6 Pseudogene 5 2 3 5
  • RPL6_4_280 3

External Ids for RPL6P5 Gene

ORGUL Members for RPL6P5 Gene

Previous GeneCards Identifiers for RPL6P5 Gene

  • GC02U901614
  • GC02P146095

Summaries for RPL6P5 Gene

GeneCards Summary for RPL6P5 Gene

RPL6P5 (Ribosomal Protein L6 Pseudogene 5) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL6P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL6P5 Gene

Genomics for RPL6P5 Gene

GeneHancer (GH) Regulatory Elements for RPL6P5 Gene

Promoters and enhancers for RPL6P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I145411 Enhancer 1 Ensembl ENCODE 10.5 +74.6 74571 0.8 MEIS2 PKNOX1 TEAD4 EBF1 BMI1 BATF IRF4 POLR2A NFATC1 ATF7 RPL6P5 GC02M145423
GH02I145299 Enhancer 0.6 VISTA UCNEbase 11.1 -36.7 -36722 1.1 GC02P145300 RPL6P5 ENSG00000235435
GH02I145379 Enhancer 0.6 ENCODE 11.1 +43.4 43412 2 JUN CEBPB EP300 SP1 FOSL1 JUND NFIC POLR2A STAT3 FOS RPL6P5 GC02M145423
GH02I145304 Enhancer 0.3 ENCODE 10.3 -32.4 -32440 0.9 NR2C1 RPL6P5 GC02P145300 ENSG00000235435
GH02I145241 Enhancer 0.2 FANTOM5 10.5 -95.7 -95748 0.2 RPL6P5 GC02P145300 LOC100505498 TEX41
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL6P5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL6P5 Gene

Genomic Locations for RPL6P5 Gene
chr2:145,337,230-145,338,063
(GRCh38/hg38)
Size:
834 bases
Orientation:
Plus strand
chr2:146,094,798-146,095,631
(GRCh37/hg19)

Genomic View for RPL6P5 Gene

Genes around RPL6P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL6P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL6P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL6P5 Gene

Proteins for RPL6P5 Gene

Post-translational modifications for RPL6P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL6P5 Gene

Domains & Families for RPL6P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL6P5 Gene

Function for RPL6P5 Gene

Phenotypes From GWAS Catalog for RPL6P5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL6P5 Gene

Localization for RPL6P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL6P5 Gene

Pathways & Interactions for RPL6P5 Gene

SuperPathways for RPL6P5 Gene

No Data Available

Interacting Proteins for RPL6P5 Gene

Gene Ontology (GO) - Biological Process for RPL6P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL6P5 Gene

Drugs & Compounds for RPL6P5 Gene

No Compound Related Data Available

Transcripts for RPL6P5 Gene

mRNA/cDNA for RPL6P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL6P5 Gene

No ASD Table

Relevant External Links for RPL6P5 Gene

GeneLoc Exon Structure for
RPL6P5
ECgene alternative splicing isoforms for
RPL6P5

Expression for RPL6P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL6P5 Gene

mRNA differential expression in normal tissues according to GTEx for RPL6P5 Gene

This gene is overexpressed in Heart - Atrial Appendage (x21.9).

NURSA nuclear receptor signaling pathways regulating expression of RPL6P5 Gene:

RPL6P5
genes like me logo Genes that share expression patterns with RPL6P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL6P5 Gene

Orthologs for RPL6P5 Gene

Evolution for RPL6P5 Gene

ENSEMBL:
Gene Tree for RPL6P5 (if available)
TreeFam:
Gene Tree for RPL6P5 (if available)

No data available for Orthologs for RPL6P5 Gene

Paralogs for RPL6P5 Gene

No data available for Paralogs for RPL6P5 Gene

Variants for RPL6P5 Gene

Additional Variant Information for RPL6P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL6P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL6P5 Gene

Disorders for RPL6P5 Gene

Additional Disease Information for RPL6P5

Genetic Association Database
(GAD)

No disorders were found for RPL6P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL6P5 Gene

Publications for RPL6P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Web-based, participant-driven studies yield novel genetic associations for common traits. (PMID: 20585627) Eriksson N … Mountain J (PLoS genetics 2010) 44 58
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 44 58
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 44 58
  5. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 44 58

Products for RPL6P5 Gene

Sources for RPL6P5 Gene

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