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RPL6P13 Gene(Pseudogene)

Ribosomal Protein L6 Pseudogene 13

GCID:
GC04P086870
GIFtS:
10
Genes Participants
UDN Logo

Aliases for RPL6P13 Gene

Aliases for RPL6P13 Gene

  • Ribosomal Protein L6 Pseudogene 13 2 3
  • RPL6_10_498 3
  • AC093827.1 5

External Ids for RPL6P13 Gene

Previous GeneCards Identifiers for RPL6P13 Gene

  • GC04P088011
  • GC04P087792

Summaries for RPL6P13 Gene

GeneCards Summary for RPL6P13 Gene

RPL6P13 (Ribosomal Protein L6 Pseudogene 13) is a Pseudogene.

Additional gene information for RPL6P13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL6P13 Gene

Genomics for RPL6P13 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPL6P13 Gene

Promoters and enhancers for RPL6P13 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04I087004 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 23.7 +140.3 140288 11.9 CLOCK MLX ZFP64 IRF4 YY1 ZNF213 E2F8 ZNF143 NFYC ZNF610 AFF1 RPL6P13 AFF1-AS1 C4orf36 LOC100419572 LOC260422 MAPK10 HSD17B13 SLC10A6 GC04P087042
GH04I087388 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 19.2 +520.2 520219 4.1 HDGF FOXA2 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B HSD17B11 NUDT9 RPL6P13 HSD17B13 AFF1 RN7SL681P
GH04I086890 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 20.1 +22.1 22138 3 ZFP64 SIN3A ZNF2 ZNF48 GLIS2 ZNF213 ZNF302 KLF7 SP3 REST C4orf36 RPL6P13 NUDT9 MAPK10 LOC100419572 LOC260422 SLC10A6 GC04P086879 AFF1-AS1
GH04I086933 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 15.5 +67.3 67342 7.8 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 C4orf36 AFF1 AFF1-AS1 RPL6P13 LOC100419572 LOC260422 MAPK10 SLC10A6 TECRP1
GH04I087418 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.8 +551.3 551334 5.6 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B NUDT9 GC04M087420 HSD17B11 RPL6P13 LOC100129693
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL6P13 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL6P13 Gene

Genomic Locations for RPL6P13 Gene
chr4:86,870,165-86,871,433
(GRCh38/hg38)
Size:
1,269 bases
Orientation:
Plus strand
chr4:87,791,318-87,792,586
(GRCh37/hg19)

Genomic View for RPL6P13 Gene

Genes around RPL6P13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL6P13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL6P13 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL6P13 Gene

Proteins for RPL6P13 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL6P13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL6P13 Gene

Domains & Families for RPL6P13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL6P13 Gene

Function for RPL6P13 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL6P13 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL6P13 Gene

Localization for RPL6P13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL6P13 Gene

Pathways & Interactions for RPL6P13 Gene

SuperPathways for RPL6P13 Gene

PathCards logo More details on SuperPathways for RPL6P13
No Data Available

Interacting Proteins for RPL6P13 Gene

Gene Ontology (GO) - Biological Process for RPL6P13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL6P13 Gene

Drugs & Compounds for RPL6P13 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL6P13 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL6P13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL6P13 Gene

No ASD Table

Relevant External Links for RPL6P13 Gene

GeneLoc Exon Structure for
RPL6P13
ECgene alternative splicing isoforms for
RPL6P13

Expression for RPL6P13 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL6P13 Gene

mRNA expression in normal human tissues for RPL6P13 Gene
mRNA expression by GTEx for RPL6P13 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL6P13 Gene:

RPL6P13
genes like me logo Genes that share expression patterns with RPL6P13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL6P13 Gene

Orthologs for RPL6P13 Gene

Evolution for RPL6P13 Gene

ENSEMBL:
Gene Tree for RPL6P13 (if available)
TreeFam:
Gene Tree for RPL6P13 (if available)

No data available for Orthologs for RPL6P13 Gene

Paralogs for RPL6P13 Gene

No data available for Paralogs for RPL6P13 Gene

Variants for RPL6P13 Gene

Additional Variant Information for RPL6P13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL6P13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL6P13 Gene

Disorders for RPL6P13 Gene

No disorders were found for RPL6P13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL6P13 Gene

Publications for RPL6P13 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL6P13 Gene

Sources for RPL6P13 Gene

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