RPL5P25 Gene (Pseudogene)

Ribosomal Protein L5 Pseudogene 25

GC10M013057
GIFtS:
6
See more...

Aliases for RPL5P25 Gene

Aliases for RPL5P25 Gene

  • Ribosomal Protein L5 Pseudogene 25 2 3 5
  • RPL5_10_1021 3
  • RPL5P25 5

External Ids for RPL5P25 Gene

Previous GeneCards Identifiers for RPL5P25 Gene

  • GC10U901099
  • GC10M013100

Summaries for RPL5P25 Gene

GeneCards Summary for RPL5P25 Gene

RPL5P25 (Ribosomal Protein L5 Pseudogene 25) is a Pseudogene.

Additional gene information for RPL5P25 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL5P25 Gene

Genomics for RPL5P25 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPL5P25 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J013054 Enhancer 0.5 FANTOM5 Ensembl 0.7 +4.1 4148 0.8 MAX OPTN CCDC3 MIR548Q RPL5P25 hsa-miR-5095-036 lnc-CCDC3-1 CAMK1D
GH10J013065 Enhancer 0.4 Ensembl 0.4 -7.3 -7276 0.8 PKNOX1 NRF1 SREBF1 OPTN CCDC3 MIR548Q RF00017-591 RPL5P25 lnc-CCDC3-1 CAMK1D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL5P25 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL5P25 Gene

Genomic Locations for RPL5P25 Gene
chr10:13,057,890-13,058,725
(GRCh38/hg38)
Size:
836 bases
Orientation:
Minus strand
chr10:13,099,890-13,100,725
(GRCh37/hg19)
Size:
836 bases
Orientation:
Minus strand

Genomic View for RPL5P25 Gene

Genes around RPL5P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P25 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL5P25 Gene

Proteins for RPL5P25 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL5P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P25 Gene

Domains & Families for RPL5P25 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL5P25 Gene

Function for RPL5P25 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL5P25 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P25 Gene

Localization for RPL5P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P25 Gene

Pathways & Interactions for RPL5P25 Gene

PathCards logo

SuperPathways for RPL5P25 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL5P25 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL5P25 Gene

Drugs & Compounds for RPL5P25 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL5P25 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL5P25 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P25 Gene

No ASD Table

Relevant External Links for RPL5P25 Gene

GeneLoc Exon Structure for
RPL5P25

Expression for RPL5P25 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL5P25 Gene

mRNA expression in normal human tissues for RPL5P25 Gene
mRNA expression by GTEx for RPL5P25 Gene
genes like me logo Genes that share expression patterns with RPL5P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P25 Gene

Orthologs for RPL5P25 Gene

Evolution for RPL5P25 Gene

ENSEMBL:
Gene Tree for RPL5P25 (if available)
TreeFam:
Gene Tree for RPL5P25 (if available)

No data available for Orthologs for RPL5P25 Gene

Paralogs for RPL5P25 Gene

No data available for Paralogs for RPL5P25 Gene

Variants for RPL5P25 Gene

Additional Variant Information for RPL5P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P25 Gene

Disorders for RPL5P25 Gene

Additional Disease Information for RPL5P25

Genetic Association Database
(GAD)

No disorders were found for RPL5P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P25 Gene

Publications for RPL5P25 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists. (PMID: 20526338) Johnson AD … Becker LC (Nature genetics 2010) 41

ExternalLinks

View latest publications for RPL5P25 gene in Mastermind

Products for RPL5P25 Gene

Sources for RPL5P25 Gene