Aliases for RPL5P21 Gene

Aliases for RPL5P21 Gene

  • Ribosomal Protein L5 Pseudogene 21 2 3 5
  • RPL5_7_753 3

External Ids for RPL5P21 Gene

Previous GeneCards Identifiers for RPL5P21 Gene

  • GC06U901582
  • GC06M130077

Summaries for RPL5P21 Gene

GeneCards Summary for RPL5P21 Gene

RPL5P21 (Ribosomal Protein L5 Pseudogene 21) is a Pseudogene.

Additional gene information for RPL5P21 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL5P21 Gene

Genomics for RPL5P21 Gene

GeneHancer (GH) Regulatory Elements for RPL5P21 Gene

Promoters and enhancers for RPL5P21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J130017 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.1 -262.6 -262617 4.1 HNRNPK CTCF SIN3A NRF1 ZFX ZNF639 POLR2A ZBTB10 ZBTB26 TRIM28 L3MBTL3 RPL5P21 ARHGAP18 SAMD3 RF00017-5774 LOC105378000
GH06J129677 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 11.8 +74.2 74207 11.3 CTCF NRF1 TCF12 POLR2G USF1 SP1 NCOR1 JUND PHB2 FOS ARHGAP18 RPL5P21 L3MBTL3 piR-43104-047 RF00017-5772
GH06J129729 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.5 +26.7 26711 4.8 EP300 CTCF USF1 GTF2E2 AFF1 REST RAD21 CTBP1 TRIM22 SMC3 RPL5P21 ARHGAP18 RF01061-150
GH06J129634 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 +112.6 112611 20.6 TCF12 NCOR1 EP300 REST TCF7 RELA MEF2C CUX1 ZBTB25 TGIF2 ARHGAP18 RPL5P21 RF00017-5772 piR-43104-047
GH06J129497 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 10.8 +256.7 256672 6.3 EP300 CTCF JUND FOS ZNF639 TRIM28 REST RFX1 RAD21 CTBP1 RPL5P21 ARHGAP18 RF00001-287 LOC102723409 ENSG00000226149 LAMA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL5P21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL5P21 Gene

Genomic Locations for RPL5P21 Gene
chr6:129,756,298-129,757,112
(GRCh38/hg38)
Size:
815 bases
Orientation:
Minus strand
chr6:130,077,443-130,078,257
(GRCh37/hg19)
Size:
815 bases
Orientation:
Minus strand

Genomic View for RPL5P21 Gene

Genes around RPL5P21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P21 Gene

Proteins for RPL5P21 Gene

Post-translational modifications for RPL5P21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P21 Gene

Domains & Families for RPL5P21 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL5P21 Gene

Function for RPL5P21 Gene

Phenotypes From GWAS Catalog for RPL5P21 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P21 Gene

Localization for RPL5P21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P21 Gene

Pathways & Interactions for RPL5P21 Gene

PathCards logo

SuperPathways for RPL5P21 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPL5P21 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL5P21 Gene

Drugs & Compounds for RPL5P21 Gene

No Compound Related Data Available

Transcripts for RPL5P21 Gene

mRNA/cDNA for RPL5P21 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P21 Gene

No ASD Table

Relevant External Links for RPL5P21 Gene

GeneLoc Exon Structure for
RPL5P21

Expression for RPL5P21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL5P21 Gene

genes like me logo Genes that share expression patterns with RPL5P21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P21 Gene

Orthologs for RPL5P21 Gene

Evolution for RPL5P21 Gene

ENSEMBL:
Gene Tree for RPL5P21 (if available)
TreeFam:
Gene Tree for RPL5P21 (if available)

No data available for Orthologs for RPL5P21 Gene

Paralogs for RPL5P21 Gene

No data available for Paralogs for RPL5P21 Gene

Variants for RPL5P21 Gene

Additional Variant Information for RPL5P21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P21 Gene

Disorders for RPL5P21 Gene

Additional Disease Information for RPL5P21

Genetic Association Database
(GAD)

No disorders were found for RPL5P21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P21 Gene

Publications for RPL5P21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 41 54

No data available for Mastermind for RPL5P21 Gene

Products for RPL5P21 Gene

Sources for RPL5P21 Gene