Aliases for RPL5P20 Gene

Aliases for RPL5P20 Gene

  • Ribosomal Protein L5 Pseudogene 20 2 3 5
  • RPL5_9_664 3

External Ids for RPL5P20 Gene

Previous GeneCards Identifiers for RPL5P20 Gene

  • GC06P019443

Summaries for RPL5P20 Gene

GeneCards Summary for RPL5P20 Gene

RPL5P20 (Ribosomal Protein L5 Pseudogene 20) is a Pseudogene.

Additional gene information for RPL5P20 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL5P20 Gene

Genomics for RPL5P20 Gene

GeneHancer (GH) Regulatory Elements for RPL5P20 Gene

Promoters and enhancers for RPL5P20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J019327 Enhancer 0.7 Ensembl 0.4 -20.0 -20009 2.2 ATF2 ZEB1 OSR2 BCL11A WT1 ZBTB17 TCF7L2 NFE2 KLF8 GATA3 LOC105374961 RPL5P20 ENSG00000228412
GH06J019325 Enhancer 0.7 Ensembl 0.4 -22.6 -22609 0.2 ZSCAN5C OSR2 WT1 TCF7L2 JUND KLF8 GATA3 ZNF189 ZSCAN16 HIC1 LOC105374961 RPL5P20 ENSG00000228412
GH06J019336 Enhancer 0.4 Ensembl 0.4 -11.4 -11409 1 MAFF YBX1 MAFK RPL5P20 LOC105374961 ENSG00000228412
GH06J019341 Enhancer 0.2 Ensembl 0.4 -6.4 -6409 1 RPL5P20 LOC105374961 ENSG00000228412
GH06J019326 Enhancer 0.2 Ensembl 0.4 -21.8 -21810 0.6 LOC105374961 RPL5P20 ENSG00000228412
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL5P20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL5P20 Gene

Genomic Locations for RPL5P20 Gene
chr6:19,348,110-19,349,119
(GRCh38/hg38)
Size:
1,010 bases
Orientation:
Plus strand
chr6:19,348,341-19,349,350
(GRCh37/hg19)
Size:
1,010 bases
Orientation:
Plus strand

Genomic View for RPL5P20 Gene

Genes around RPL5P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P20 Gene

Proteins for RPL5P20 Gene

Post-translational modifications for RPL5P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P20 Gene

Domains & Families for RPL5P20 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL5P20 Gene

Function for RPL5P20 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P20 Gene

Localization for RPL5P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P20 Gene

Pathways & Interactions for RPL5P20 Gene

PathCards logo

SuperPathways for RPL5P20 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPL5P20 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL5P20 Gene

Drugs & Compounds for RPL5P20 Gene

No Compound Related Data Available

Transcripts for RPL5P20 Gene

mRNA/cDNA for RPL5P20 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P20 Gene

No ASD Table

Relevant External Links for RPL5P20 Gene

GeneLoc Exon Structure for
RPL5P20

Expression for RPL5P20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL5P20 Gene

genes like me logo Genes that share expression patterns with RPL5P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P20 Gene

Orthologs for RPL5P20 Gene

Evolution for RPL5P20 Gene

ENSEMBL:
Gene Tree for RPL5P20 (if available)
TreeFam:
Gene Tree for RPL5P20 (if available)

No data available for Orthologs for RPL5P20 Gene

Paralogs for RPL5P20 Gene

No data available for Paralogs for RPL5P20 Gene

Variants for RPL5P20 Gene

Additional Variant Information for RPL5P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P20 Gene

Disorders for RPL5P20 Gene

Additional Disease Information for RPL5P20

Genetic Association Database
(GAD)

No disorders were found for RPL5P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P20 Gene

Publications for RPL5P20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54
  2. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 41 54

No data available for Mastermind for RPL5P20 Gene

Products for RPL5P20 Gene

Sources for RPL5P20 Gene