Aliases for RPL5P11 Gene

Aliases for RPL5P11 Gene

  • Ribosomal Protein L5 Pseudogene 11 2 3 5
  • RPL5_6_536 3
  • RPL5P11 5

External Ids for RPL5P11 Gene

Previous GeneCards Identifiers for RPL5P11 Gene

  • GC04M174577
  • GC04M174341

Summaries for RPL5P11 Gene

GeneCards Summary for RPL5P11 Gene

RPL5P11 (Ribosomal Protein L5 Pseudogene 11) is a Pseudogene.

Additional gene information for RPL5P11 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL5P11 Gene

Genomics for RPL5P11 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL5P11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J173418 Enhancer 0.3 ENCODE 250.7 +1.4 1427 1.1 SPI1 RPL5P11 RNU6-1096P ENSG00000248774 lnc-SAP30-11 SAP30 SCRG1
GH04J173414 Promoter/Enhancer 1.4 EPDnew FANTOM5 ENCODE 0.7 +3.7 3668 0.7 MNT IKZF1 ZNF217 ZNF639 TRIM25 ELF1 HES1 CTBP1 ZNF843 NCOR1 SCRG1 HMGB2 SAP30 RPL5P11 lnc-SAP30-11
GH04J173417 Enhancer 0.9 ENCODE 0.7 +3.0 3012 0.2 MNT IKZF1 ZNF217 CTCF MCM7 MCM3 ARNT REST NFATC3 ZNF639 HMGB2 CEP44 ENSG00000261646 HAND2-AS1 RPL5P11 lnc-SAP30-11 SAP30 SCRG1
GH04J173424 Enhancer 0.4 Ensembl ENCODE 0.4 -5.6 -5619 2.7 EP300 SCRG1 RNU6-1096P ENSG00000248774 LOC107986202 RPL5P11 SAP30
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL5P11 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL5P11 Gene

Latest Assembly
chr4:173,419,187-173,420,207
(GRCh38/hg38)
Size:
1,021 bases
Orientation:
Minus strand

Previous Assembly
chr4:174,340,338-174,341,358
(GRCh37/hg19 by Entrez Gene)
Size:
1,021 bases
Orientation:
Minus strand

chr4:174,340,396-174,341,288
(GRCh37/hg19 by Ensembl)
Size:
893 bases
Orientation:
Minus strand

Genomic View for RPL5P11 Gene

Genes around RPL5P11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P11 Gene

Proteins for RPL5P11 Gene

Post-translational modifications for RPL5P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P11 Gene

Domains & Families for RPL5P11 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL5P11 Gene

Function for RPL5P11 Gene

Phenotypes From GWAS Catalog for RPL5P11 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P11 Gene

Localization for RPL5P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P11 Gene

Pathways & Interactions for RPL5P11 Gene

PathCards logo

SuperPathways for RPL5P11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL5P11 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL5P11 Gene

Drugs & Compounds for RPL5P11 Gene

No Compound Related Data Available

Transcripts for RPL5P11 Gene

mRNA/cDNA for RPL5P11 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P11 Gene

No ASD Table

Relevant External Links for RPL5P11 Gene

GeneLoc Exon Structure for
RPL5P11

Expression for RPL5P11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL5P11 Gene

genes like me logo Genes that share expression patterns with RPL5P11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P11 Gene

Orthologs for RPL5P11 Gene

Evolution for RPL5P11 Gene

ENSEMBL:
Gene Tree for RPL5P11 (if available)
TreeFam:
Gene Tree for RPL5P11 (if available)

No data available for Orthologs for RPL5P11 Gene

Paralogs for RPL5P11 Gene

No data available for Paralogs for RPL5P11 Gene

Variants for RPL5P11 Gene

Additional Variant Information for RPL5P11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P11 Gene

Disorders for RPL5P11 Gene

Additional Disease Information for RPL5P11

Genetic Association Database
(GAD)

No disorders were found for RPL5P11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P11 Gene

Publications for RPL5P11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL5P11 Gene

Products for RPL5P11 Gene

Sources for RPL5P11 Gene