Aliases for RPL4P6 Gene

Aliases for RPL4P6 Gene

  • Ribosomal Protein L4 Pseudogene 6 2 3 5
  • RPL4_4_1752 3

External Ids for RPL4P6 Gene

Previous GeneCards Identifiers for RPL4P6 Gene

  • GC22U900526
  • GC22M040983
  • GC22M040984

Summaries for RPL4P6 Gene

GeneCards Summary for RPL4P6 Gene

RPL4P6 (Ribosomal Protein L4 Pseudogene 6) is a Pseudogene.

Additional gene information for RPL4P6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL4P6 Gene

Genomics for RPL4P6 Gene

GeneHancer (GH) Regulatory Elements for RPL4P6 Gene

Promoters and enhancers for RPL4P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J040588 Enhancer 1 Ensembl ENCODE 500.7 -1.2 -1151 1.7 NCOR1 KDM6A SKI TEAD1 ZSCAN9 CEBPB SAP130 ZNF205 FOXP1 SMAD4 RPL4P6 lnc-SLC25A17-2 MRTFA MRTFA-AS1 ENSG00000229999 GAPDHP37 MCHR1 SGSM3 lnc-MCHR1-3
GH22J040586 Enhancer 0.3 Ensembl 500.7 +1.9 1922 0.2 ZNF213 PRDM6 RPL4P6 lnc-SLC25A17-2 MRTFA lnc-MCHR1-4
GH22J040587 Enhancer 0.2 Ensembl 505.6 +1.1 1122 0.6 RPL4P6 lnc-SLC25A17-2 MRTFA MRTFA-AS1 ENSG00000229999 GAPDHP37 SGSM3 MCHR1 lnc-MCHR1-4
GH22J041444 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 22.6 -858.4 -858429 6.5 RXRA EP300 FOXK2 HNRNPK ZBTB40 ZNF217 ZSCAN5C SIN3A NRF1 TCF12 ACO2 TOB2 LOC105373043 lnc-ACO2-1 EP300 L3MBTL2 XRCC6 ZC3H7B PHF5A ENSG00000232754
GH22J041284 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 20.2 -700.3 -700298 8.1 EP300 FOXK2 ZBTB40 ZNF217 SIN3A NRF1 TCF12 MYC POLR2G SP1 RANGAP1 EP300 ENSG00000272834 ENSG00000232754 ENSG00000227413 PHF5A L3MBTL2 NAGA XRCC6 RPL4P6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL4P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL4P6 Gene

Genomic Locations for RPL4P6 Gene
chr22:40,586,625-40,588,023
(GRCh38/hg38)
Size:
1,399 bases
Orientation:
Minus strand
chr22:40,982,629-40,984,027
(GRCh37/hg19)
Size:
1,399 bases
Orientation:
Minus strand

Genomic View for RPL4P6 Gene

Genes around RPL4P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL4P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL4P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL4P6 Gene

Proteins for RPL4P6 Gene

Post-translational modifications for RPL4P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL4P6 Gene

Domains & Families for RPL4P6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL4P6 Gene

Function for RPL4P6 Gene

Phenotypes From GWAS Catalog for RPL4P6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL4P6 Gene

Localization for RPL4P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL4P6 Gene

Pathways & Interactions for RPL4P6 Gene

PathCards logo

SuperPathways for RPL4P6 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPL4P6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL4P6 Gene

Drugs & Compounds for RPL4P6 Gene

No Compound Related Data Available

Transcripts for RPL4P6 Gene

mRNA/cDNA for RPL4P6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL4P6 Gene

No ASD Table

Relevant External Links for RPL4P6 Gene

GeneLoc Exon Structure for
RPL4P6

Expression for RPL4P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL4P6 Gene

genes like me logo Genes that share expression patterns with RPL4P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL4P6 Gene

Orthologs for RPL4P6 Gene

Evolution for RPL4P6 Gene

ENSEMBL:
Gene Tree for RPL4P6 (if available)
TreeFam:
Gene Tree for RPL4P6 (if available)

No data available for Orthologs for RPL4P6 Gene

Paralogs for RPL4P6 Gene

No data available for Paralogs for RPL4P6 Gene

Variants for RPL4P6 Gene

Additional Variant Information for RPL4P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL4P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL4P6 Gene

Disorders for RPL4P6 Gene

Additional Disease Information for RPL4P6

Genetic Association Database
(GAD)

No disorders were found for RPL4P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL4P6 Gene

Publications for RPL4P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54
  2. Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis. (PMID: 22310353) Man M … Garcia JG (The pharmacogenomics journal 2013) 41 54

No data available for Mastermind for RPL4P6 Gene

Products for RPL4P6 Gene

Sources for RPL4P6 Gene