Aliases for RPL39P4 Gene

Aliases for RPL39P4 Gene

  • Ribosomal Protein L39 Pseudogene 4 2 3
  • RPL39_18_1545 3

External Ids for RPL39P4 Gene

Previous GeneCards Identifiers for RPL39P4 Gene

  • GC17U900592
  • GC17M037996

Summaries for RPL39P4 Gene

GeneCards Summary for RPL39P4 Gene

RPL39P4 (Ribosomal Protein L39 Pseudogene 4) is a Pseudogene.

Additional gene information for RPL39P4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL39P4 Gene

Genomics for RPL39P4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL39P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J039839 Promoter/Enhancer 0.5 EPDnew dbSUPER 600.7 0.0 -20 0.1 IKZF3 ENSG00000226117 RPL39P4 ZPBP2 LRRC3C ORMDL3 GSDMA GRB7
GH17J039842 Enhancer 0.7 ENCODE dbSUPER 0.7 -4.1 -4060 1.3 RNF2 NR2F1 JUNB BATF EBF1 TBL1XR1 EZH2 GSDMA ZPBP2 IKZF3 LRRC3C ORMDL3 GSDMB RPL39P4 GRB7
GH17J039852 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -13.7 -13727 3.8 PRDM10 IKZF2 DPF2 PKNOX1 ZNF184 HMBOX1 EGR1 RUNX3 BCLAF1 NBN GSDMB LRRC3C ORMDL3 GSDMA RPL39P4 IKZF3 GRB7
GH17J039847 Enhancer 0.6 ENCODE dbSUPER 0.4 -8.9 -8874 1.9 PRDM10 SCRT2 ZSCAN29 ZNF316 PRDM6 MAFK GSDMB ORMDL3 LRRC3C RPL39P4 IKZF3 GRB7
GH17J039856 Enhancer 0.6 Ensembl dbSUPER 0.4 -16.9 -16928 0.6 NFATC3 BHLHE40 MZF1 GSDMB IKZF3 RPL39P4 GRB7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL39P4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL39P4 Gene

Genomic Locations for RPL39P4 Gene
chr17:39,839,172-39,839,573
(GRCh38/hg38)
Size:
402 bases
Orientation:
Minus strand
chr17:37,995,428-37,995,826
(GRCh37/hg19)
Size:
399 bases
Orientation:
Minus strand

Genomic View for RPL39P4 Gene

Genes around RPL39P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P4 Gene

Proteins for RPL39P4 Gene

Post-translational modifications for RPL39P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P4 Gene

Domains & Families for RPL39P4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL39P4 Gene

Function for RPL39P4 Gene

Phenotypes From GWAS Catalog for RPL39P4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P4 Gene

Localization for RPL39P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P4 Gene

Pathways & Interactions for RPL39P4 Gene

PathCards logo

SuperPathways for RPL39P4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL39P4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL39P4 Gene

Drugs & Compounds for RPL39P4 Gene

No Compound Related Data Available

Transcripts for RPL39P4 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P4 Gene

No ASD Table

Relevant External Links for RPL39P4 Gene

GeneLoc Exon Structure for
RPL39P4

No data available for mRNA/cDNA for RPL39P4 Gene

Expression for RPL39P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL39P4 Gene

genes like me logo Genes that share expression patterns with RPL39P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P4 Gene

Orthologs for RPL39P4 Gene

No data available for Orthologs and Evolution for RPL39P4 Gene

Paralogs for RPL39P4 Gene

No data available for Paralogs for RPL39P4 Gene

Variants for RPL39P4 Gene

Additional Variant Information for RPL39P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P4 Gene

Disorders for RPL39P4 Gene

No disorders were found for RPL39P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P4 Gene

Publications for RPL39P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL39P4 Gene

Products for RPL39P4 Gene

Sources for RPL39P4 Gene