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Aliases for RPL39P38 Gene

Aliases for RPL39P38 Gene

  • Ribosomal Protein L39 Pseudogene 38 2 3 5
  • RPL39_19_1635 3

External Ids for RPL39P38 Gene

Previous GeneCards Identifiers for RPL39P38 Gene

  • GC19U901040
  • GC19M018395

Summaries for RPL39P38 Gene

GeneCards Summary for RPL39P38 Gene

RPL39P38 (Ribosomal Protein L39 Pseudogene 38) is a Pseudogene.

Additional gene information for RPL39P38 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P38 Gene

Genomics for RPL39P38 Gene

GeneHancer (GH) Regulatory Elements for RPL39P38 Gene

Promoters and enhancers for RPL39P38 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I018286 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 -1.8 -1765 2.6 ZFP64 SIN3A ETS1 ZNF335 GLIS2 SMARCC1 ELF1 ZNF623 SP1 GLIS1 RPL39P38 IQCN GC19P020225
GH19I018284 Enhancer 0.8 ENCODE dbSUPER 550.8 +0.4 406 1.2 SMARCA5 ZNF687 RB1 NR2F1 EBF1 DPF2 ZNF48 ZNF335 ZFHX2 EGR1 RPL39P38 IQCN PDE4C MIR3188
GH19I018289 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.7 -6691 6.1 YBX1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 MEF2D NR2C2AP ENSG00000268030 IQCN SUGP2 UPF1 COLGALT1 ENSG00000268938 MVB12A MEF2B ENSG00000269191
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL39P38 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL39P38 Gene

Genomic Locations for RPL39P38 Gene
chr19:18,285,166-18,285,545
(GRCh38/hg38)
Size:
380 bases
Orientation:
Minus strand
chr19:18,395,976-18,396,355
(GRCh37/hg19)

Genomic View for RPL39P38 Gene

Genes around RPL39P38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P38 Gene

Proteins for RPL39P38 Gene

Post-translational modifications for RPL39P38 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P38 Gene

Domains & Families for RPL39P38 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P38 Gene

Function for RPL39P38 Gene

Phenotypes From GWAS Catalog for RPL39P38 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P38 Gene

Localization for RPL39P38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P38 Gene

Pathways & Interactions for RPL39P38 Gene

SuperPathways for RPL39P38 Gene

No Data Available

Interacting Proteins for RPL39P38 Gene

Gene Ontology (GO) - Biological Process for RPL39P38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P38 Gene

Drugs & Compounds for RPL39P38 Gene

No Compound Related Data Available

Transcripts for RPL39P38 Gene

mRNA/cDNA for RPL39P38 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P38 Gene

No ASD Table

Relevant External Links for RPL39P38 Gene

GeneLoc Exon Structure for
RPL39P38
ECgene alternative splicing isoforms for
RPL39P38

Expression for RPL39P38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P38 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P38 Gene:

RPL39P38
genes like me logo Genes that share expression patterns with RPL39P38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P38 Gene

Orthologs for RPL39P38 Gene

Evolution for RPL39P38 Gene

ENSEMBL:
Gene Tree for RPL39P38 (if available)
TreeFam:
Gene Tree for RPL39P38 (if available)

No data available for Orthologs for RPL39P38 Gene

Paralogs for RPL39P38 Gene

No data available for Paralogs for RPL39P38 Gene

Variants for RPL39P38 Gene

Additional Variant Information for RPL39P38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P38 Gene

Disorders for RPL39P38 Gene

No disorders were found for RPL39P38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P38 Gene

Publications for RPL39P38 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL39P38 Gene

Sources for RPL39P38 Gene

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