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Aliases for RPL39P30 Gene

Aliases for RPL39P30 Gene

  • Ribosomal Protein L39 Pseudogene 30 2 3
  • RPL39_12_1504 3
  • AC010531.2 5

External Ids for RPL39P30 Gene

Previous GeneCards Identifiers for RPL39P30 Gene

  • GC16U900948
  • GC16P087305

Summaries for RPL39P30 Gene

GeneCards Summary for RPL39P30 Gene

RPL39P30 (Ribosomal Protein L39 Pseudogene 30) is a Pseudogene.

Additional gene information for RPL39P30 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P30 Gene

Genomics for RPL39P30 Gene

GeneHancer (GH) Regulatory Elements for RPL39P30 Gene

Promoters and enhancers for RPL39P30 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I087263 Enhancer 0.6 ENCODE 0.8 -4.5 -4481 0.2 ESRRA USF1 USF2 REST ZNF507 SREBF1 JUND CREB1 FOS MTHFSD FOXC2 C16orf95 RPL39P30 LOC101928682 ENSG00000261651
GH16I087278 Enhancer 0.7 ENCODE 0.4 +10.5 10543 0.8 GTF2F1 CTCF SIN3A ZNF48 RAD21 SMC3 ZNF143 NR2F6 ZNF444 THAP11 C16orf95 GC16P087283 RPL39P30 LOC101928682
GH16I087239 Enhancer 0.9 ENCODE 0.3 -27.1 -27121 2.4 PKNOX1 FOXA2 NEUROD1 ZNF48 SLC30A9 FOS SP5 ZHX2 SMARCB1 NFIL3 C16orf95 ENSG00000261651 RPL39P30
GH16I087258 Enhancer 0.5 FANTOM5 0.4 -9.2 -9188 0.1 IKZF1 ZNF384 NR2F6 PRDM10 ATF7 NR2C2 MTHFSD FOXC2 RPL39P30 ENSG00000261651 C16orf95
GH16I087277 Enhancer 0.5 ENCODE 0.4 +9.5 9549 0.1 ZFHX2 NFIC NFIB ZNF189 KLF4 EGR2 GC16P087283 RPL39P30 LOC101928682 C16orf95
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL39P30 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL39P30 Gene

Genomic Locations for RPL39P30 Gene
chr16:87,268,131-87,268,535
(GRCh38/hg38)
Size:
405 bases
Orientation:
Plus strand
chr16:87,301,737-87,302,141
(GRCh37/hg19)

Genomic View for RPL39P30 Gene

Genes around RPL39P30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P30 Gene

Proteins for RPL39P30 Gene

Post-translational modifications for RPL39P30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P30 Gene

Domains & Families for RPL39P30 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P30 Gene

Function for RPL39P30 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P30 Gene

Localization for RPL39P30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P30 Gene

Pathways & Interactions for RPL39P30 Gene

SuperPathways for RPL39P30 Gene

No Data Available

Interacting Proteins for RPL39P30 Gene

Gene Ontology (GO) - Biological Process for RPL39P30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P30 Gene

Drugs & Compounds for RPL39P30 Gene

No Compound Related Data Available

Transcripts for RPL39P30 Gene

mRNA/cDNA for RPL39P30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P30 Gene

No ASD Table

Relevant External Links for RPL39P30 Gene

GeneLoc Exon Structure for
RPL39P30
ECgene alternative splicing isoforms for
RPL39P30

Expression for RPL39P30 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P30 Gene:

RPL39P30
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P30 Gene

Orthologs for RPL39P30 Gene

Evolution for RPL39P30 Gene

ENSEMBL:
Gene Tree for RPL39P30 (if available)
TreeFam:
Gene Tree for RPL39P30 (if available)

No data available for Orthologs for RPL39P30 Gene

Paralogs for RPL39P30 Gene

No data available for Paralogs for RPL39P30 Gene

Variants for RPL39P30 Gene

Additional Variant Information for RPL39P30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P30 Gene

Disorders for RPL39P30 Gene

Additional Disease Information for RPL39P30

Genetic Association Database
(GAD)

No disorders were found for RPL39P30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL39P30 Gene

Publications for RPL39P30 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 44 58
  3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58

Products for RPL39P30 Gene

Sources for RPL39P30 Gene

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