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Aliases for RPL39P3 Gene

Aliases for RPL39P3 Gene

  • Ribosomal Protein L39 Pseudogene 3 2 3
  • RPL39_9_712 3

External Ids for RPL39P3 Gene

Previous GeneCards Identifiers for RPL39P3 Gene

  • GC06U900339
  • GC06M074078
  • GC06M074139
  • GC06M074083

Summaries for RPL39P3 Gene

GeneCards Summary for RPL39P3 Gene

RPL39P3 (Ribosomal Protein L39 Pseudogene 3) is a Pseudogene.

Additional gene information for RPL39P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P3 Gene

Genomics for RPL39P3 Gene

GeneHancer (GH) Regulatory Elements for RPL39P3 Gene

Promoters and enhancers for RPL39P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I073460 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.4 -88.5 -88522 2.5 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 SP3 MTO1 EEF1A1 EIF3EP1 KHDC1 SLC17A5 ENSG00000229852 CD109 RPL39P3 RNU6-975P
GH06I073421 Enhancer 1 Ensembl ENCODE 11.3 -49.1 -49124 2 HDAC1 PKNOX1 ATF1 NFRKB TCF12 ZNF766 ATF7 RUNX3 CREM ZBTB11 DDX43 OOEP RPS6P8 RPL39P3 OOEP-AS1 CGAS
GH06I073348 Enhancer 0.5 ENCODE 11.3 +24.0 23975 2.2 SP1 POU5F1 ETS1 EZH2 RPL39P3 OOEP-AS1 OOEP KHDC1 RPS6P8 DDX43 MTO1 SLC17A5 DPPA5 PAICSP3
GH06I073369 Promoter 0.6 EPDnew 0.8 +3.4 3442 0.1 ZBTB33 OOEP-AS1 OOEP RPL39P3
GH06I073388 Enhancer 1.2 Ensembl ENCODE 0.4 -15.7 -15696 1.3 ATF1 ARNT ZNF2 POLR2B ZNF766 GLIS2 ZNF143 KLF7 ATF7 GTF2B EEF1A1 KHDC3L DPPA5 RPS6P8 OOEP RPL39P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL39P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL39P3 Gene

Genomic Locations for RPL39P3 Gene
chr6:73,372,930-73,373,313
(GRCh38/hg38)
Size:
384 bases
Orientation:
Minus strand
chr6:74,082,653-74,083,036
(GRCh37/hg19)

Genomic View for RPL39P3 Gene

Genes around RPL39P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P3 Gene

Proteins for RPL39P3 Gene

Post-translational modifications for RPL39P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P3 Gene

Domains & Families for RPL39P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P3 Gene

Function for RPL39P3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P3 Gene

Localization for RPL39P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P3 Gene

Pathways & Interactions for RPL39P3 Gene

SuperPathways for RPL39P3 Gene

No Data Available

Interacting Proteins for RPL39P3 Gene

Gene Ontology (GO) - Biological Process for RPL39P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P3 Gene

Drugs & Compounds for RPL39P3 Gene

No Compound Related Data Available

Transcripts for RPL39P3 Gene

mRNA/cDNA for RPL39P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P3 Gene

No ASD Table

Relevant External Links for RPL39P3 Gene

GeneLoc Exon Structure for
RPL39P3
ECgene alternative splicing isoforms for
RPL39P3

Expression for RPL39P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P3 Gene:

RPL39P3
genes like me logo Genes that share expression patterns with RPL39P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P3 Gene

Orthologs for RPL39P3 Gene

Evolution for RPL39P3 Gene

ENSEMBL:
Gene Tree for RPL39P3 (if available)
TreeFam:
Gene Tree for RPL39P3 (if available)

No data available for Orthologs for RPL39P3 Gene

Paralogs for RPL39P3 Gene

No data available for Paralogs for RPL39P3 Gene

Variants for RPL39P3 Gene

Additional Variant Information for RPL39P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P3 Gene

Disorders for RPL39P3 Gene

No disorders were found for RPL39P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P3 Gene

Publications for RPL39P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58
  3. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for RPL39P3 Gene

Sources for RPL39P3 Gene

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