Aliases for RPL39P28 Gene

Aliases for RPL39P28 Gene

  • Ribosomal Protein L39 Pseudogene 28 2 3 5
  • RPL39_14_1253 3
  • RPL39P28 5

External Ids for RPL39P28 Gene

Previous GeneCards Identifiers for RPL39P28 Gene

  • GC12U901049
  • GC12M068396

Summaries for RPL39P28 Gene

GeneCards Summary for RPL39P28 Gene

RPL39P28 (Ribosomal Protein L39 Pseudogene 28) is a Pseudogene.

Additional gene information for RPL39P28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL39P28 Gene

Genomics for RPL39P28 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL39P28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067988 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.6 10633 5 SP1 FOXA1 RELA TCF12 IKZF2 POLR2A PKNOX1 EED ARID3A RELB IFNG-AS1 LINC01479 IFNG IL22 DYRK2 RPL39P28 LOC107984526
GH12J068006 Enhancer 0.6 Ensembl 0.4 -5.5 -5453 0.4 SP1 FOXA2 YY1 ZBTB33 JUND HNF4A RXRA MAX ZNF350 ATF3 lnc-IFNG-6 NUP107 RPL39P28 IFNG-AS1 lnc-IFNG-5 LOC107984526 IFNG DYRK2
GH12J067994 Enhancer 0.3 Ensembl 0.4 +7.4 7447 0.2 CTCF IFNG-AS1 RPL39P28 LOC107984526 IFNG DYRK2
GH12J067998 Enhancer 0.2 Ensembl 0.7 +3.4 3447 0.2 RPL39P28 IFNG-AS1 LOC107984526 IFNG DYRK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL39P28 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL39P28 Gene

Genomic Locations for RPL39P28 Gene
chr12:68,001,394-68,001,548
(GRCh38/hg38)
Size:
155 bases
Orientation:
Minus strand
chr12:68,395,174-68,395,328
(GRCh37/hg19)
Size:
155 bases
Orientation:
Minus strand

Genomic View for RPL39P28 Gene

Genes around RPL39P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P28 Gene

Proteins for RPL39P28 Gene

Post-translational modifications for RPL39P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P28 Gene

Domains & Families for RPL39P28 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL39P28 Gene

Function for RPL39P28 Gene

Phenotypes From GWAS Catalog for RPL39P28 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P28 Gene

Localization for RPL39P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P28 Gene

Pathways & Interactions for RPL39P28 Gene

PathCards logo

SuperPathways for RPL39P28 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL39P28 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL39P28 Gene

Drugs & Compounds for RPL39P28 Gene

No Compound Related Data Available

Transcripts for RPL39P28 Gene

mRNA/cDNA for RPL39P28 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P28 Gene

No ASD Table

Relevant External Links for RPL39P28 Gene

GeneLoc Exon Structure for
RPL39P28

Expression for RPL39P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL39P28 Gene

genes like me logo Genes that share expression patterns with RPL39P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P28 Gene

Orthologs for RPL39P28 Gene

Evolution for RPL39P28 Gene

ENSEMBL:
Gene Tree for RPL39P28 (if available)
TreeFam:
Gene Tree for RPL39P28 (if available)

No data available for Orthologs for RPL39P28 Gene

Paralogs for RPL39P28 Gene

No data available for Paralogs for RPL39P28 Gene

Variants for RPL39P28 Gene

Additional Variant Information for RPL39P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P28 Gene

Disorders for RPL39P28 Gene

Additional Disease Information for RPL39P28

Genetic Association Database
(GAD)

No disorders were found for RPL39P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL39P28 Gene

Publications for RPL39P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. (PMID: 21297633) Anderson CA … Rioux JD (Nature genetics 2011) 41
  3. Genome-wide association identifies multiple ulcerative colitis susceptibility loci. (PMID: 20228799) McGovern DP … Seielstad M (Nature genetics 2010) 41
  4. Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study. (PMID: 19122664) Silverberg MS … Duerr RH (Nature genetics 2009) 41

No data available for Mastermind for RPL39P28 Gene

Products for RPL39P28 Gene

Sources for RPL39P28 Gene