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RPL39P26 Gene(Pseudogene)

Ribosomal Protein L39 Pseudogene 26

GCID:
GC11M013685
GIFtS:
9
Genes Participants
UDN Logo

Aliases for RPL39P26 Gene

Aliases for RPL39P26 Gene

  • Ribosomal Protein L39 Pseudogene 26 2 3 5
  • RPL39_12_1121 3

External Ids for RPL39P26 Gene

Previous GeneCards Identifiers for RPL39P26 Gene

  • GC11U901285
  • GC11M013708

Summaries for RPL39P26 Gene

GeneCards Summary for RPL39P26 Gene

RPL39P26 (Ribosomal Protein L39 Pseudogene 26) is a Pseudogene.

Additional gene information for RPL39P26 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P26 Gene

Genomics for RPL39P26 Gene

GeneHancer (GH) Regulatory Elements for RPL39P26 Gene

Promoters and enhancers for RPL39P26 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J013685 Enhancer 0.6 ENCODE dbSUPER 600.7 -0.1 -117 0.8 ZSCAN29 JUN ENSG00000200685 GC11M013687 RPL39P26 FAR1
GH11J013680 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +4.7 4735 1.7 IKZF1 BACH1 IKZF2 ZNF143 PKNOX1 ZNF316 DPF2 USF1 ZNF18 BATF RPL39P26 FAR1 FAR1-IT1
GH11J013676 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +9.6 9581 3.4 NFE2 PRDM4 CEBPB CEBPG ZBTB33 FAR1 FAR1-IT1 RPL39P26
GH11J013672 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +12.8 12803 1 IKZF1 ZNF362 FAR1 FAR1-IT1 RPL39P26
GH11J013679 Enhancer 0.4 ENCODE dbSUPER 0.4 +5.7 5735 0.2 RPL39P26 FAR1 FAR1-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL39P26 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL39P26 Gene

Genomic Locations for RPL39P26 Gene
chr11:13,685,305-13,685,704
(GRCh38/hg38)
Size:
400 bases
Orientation:
Minus strand
chr11:13,707,046-13,707,203
(GRCh37/hg19)
Size:
158 bases
Orientation:
Minus strand

Genomic View for RPL39P26 Gene

Genes around RPL39P26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P26 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL39P26 Gene

Proteins for RPL39P26 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL39P26 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P26 Gene

Domains & Families for RPL39P26 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P26 Gene

Function for RPL39P26 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL39P26 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P26 Gene

Localization for RPL39P26 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P26 Gene

Pathways & Interactions for RPL39P26 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for RPL39P26 Gene

No Data Available

Interacting Proteins for RPL39P26 Gene

Gene Ontology (GO) - Biological Process for RPL39P26 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P26 Gene

Drugs & Compounds for RPL39P26 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for RPL39P26 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL39P26 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P26 Gene

No ASD Table

Relevant External Links for RPL39P26 Gene

GeneLoc Exon Structure for
RPL39P26
ECgene alternative splicing isoforms for
RPL39P26

Expression for RPL39P26 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P26 Gene

mRNA expression in normal human tissues for RPL39P26 Gene
mRNA expression by GTEx for RPL39P26 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P26 Gene:

RPL39P26
genes like me logo Genes that share expression patterns with RPL39P26: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P26 Gene

Orthologs for RPL39P26 Gene

Evolution for RPL39P26 Gene

ENSEMBL:
Gene Tree for RPL39P26 (if available)
TreeFam:
Gene Tree for RPL39P26 (if available)

No data available for Orthologs for RPL39P26 Gene

Paralogs for RPL39P26 Gene

No data available for Paralogs for RPL39P26 Gene

Variants for RPL39P26 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Additional Variant Information for RPL39P26 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P26 Gene

Disorders for RPL39P26 Gene

No disorders were found for RPL39P26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P26 Gene

Publications for RPL39P26 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

No data available for External Links for RPL39P26 Gene

Products for RPL39P26 Gene

Sources for RPL39P26 Gene

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