RPL39P11 Gene (Pseudogene)

Ribosomal Protein L39 Pseudogene 11

GC01M179270
GIFtS:
4
See more...

Aliases for RPL39P11 Gene

Aliases for RPL39P11 Gene

  • Ribosomal Protein L39 Pseudogene 11 2 3
  • RPL39_3_134 3

External Ids for RPL39P11 Gene

Previous GeneCards Identifiers for RPL39P11 Gene

  • GC01U902313
  • GC01M179241
  • GC01M179271

Summaries for RPL39P11 Gene

GeneCards Summary for RPL39P11 Gene

RPL39P11 (Ribosomal Protein L39 Pseudogene 11) is a Pseudogene.

Additional gene information for RPL39P11 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL39P11 Gene

Genomics for RPL39P11 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPL39P11 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J179287 Enhancer 0.7 Ensembl ENCODE 0.4 -17.2 -17185 2.3 CEBPA CEBPB SP1 NR2F1 ZNF384 ZNF366 RXRA NR2F6 KLF16 CEBPG TOR3A SOAT1 AXDND1 RPL39P11 ABL2
GH01J179294 Enhancer 0.8 ENCODE 0.4 -21.3 -21279 0.2 GATAD2A ZNF512 CTCF FOXA1 ZNF24 REST RAD21 TRIM22 PKNOX1 CBX3 SOAT1 AXDND1 RPL39P11 ABL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL39P11 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL39P11 Gene

Genomic Locations for RPL39P11 Gene
chr1:179,270,927-179,271,282
(GRCh38/hg38)
Size:
356 bases
Orientation:
Minus strand
chr1:179,240,251-179,240,401
(GRCh37/hg19)
Size:
151 bases
Orientation:
Minus strand

Genomic View for RPL39P11 Gene

Genes around RPL39P11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P11 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL39P11 Gene

Proteins for RPL39P11 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL39P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P11 Gene

Domains & Families for RPL39P11 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL39P11 Gene

Function for RPL39P11 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P11 Gene

Localization for RPL39P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P11 Gene

Pathways & Interactions for RPL39P11 Gene

PathCards logo

SuperPathways for RPL39P11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL39P11 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL39P11 Gene

Drugs & Compounds for RPL39P11 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL39P11 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P11 Gene

No ASD Table

Relevant External Links for RPL39P11 Gene

GeneLoc Exon Structure for
RPL39P11

No data available for mRNA/cDNA for RPL39P11 Gene

Expression for RPL39P11 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL39P11 Gene

mRNA expression in normal human tissues for RPL39P11 Gene
mRNA expression by GTEx for RPL39P11 Gene
genes like me logo Genes that share expression patterns with RPL39P11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P11 Gene

Orthologs for RPL39P11 Gene

No data available for Orthologs and Evolution for RPL39P11 Gene

Paralogs for RPL39P11 Gene

No data available for Paralogs for RPL39P11 Gene

Variants for RPL39P11 Gene

Additional Variant Information for RPL39P11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P11 Gene

Disorders for RPL39P11 Gene

No disorders were found for RPL39P11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P11 Gene

Publications for RPL39P11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

ExternalLinks

View latest publications for RPL39P11 gene in Mastermind

Products for RPL39P11 Gene

Sources for RPL39P11 Gene