Aliases for RPL39P Gene

Aliases for RPL39P Gene

  • Ribosomal Protein L39 Pseudogene 2 3 5
  • DJ1167H4.5 2 3
  • RPL39_20_1715 3
  • RPL39P 5

External Ids for RPL39P Gene

Previous GeneCards Identifiers for RPL39P Gene

  • GC20U990130
  • GC20M055672
  • GC20M055719
  • GC20M054467
  • GC20M055035
  • GC20M051819

Summaries for RPL39P Gene

GeneCards Summary for RPL39P Gene

RPL39P (Ribosomal Protein L39 Pseudogene) is a Pseudogene.

Additional gene information for RPL39P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL39P Gene

Genomics for RPL39P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL39P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J056460 Enhancer 0.7 ENCODE dbSUPER 600.7 -1.4 -1402 1.5 RFX1 CTBP1 BMI1 ZBTB40 ATF4 ZBTB1 ATF3 FOS ATF2 RPL39P RTF2 CASS4 lnc-GCNT7-1
GH20J056408 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.2 +42.5 42518 17 CEBPG GATAD2A YBX1 PRDM10 REST LEF1 IKZF1 ETV6 JUND GABPA CASS4 RTF2 CSTF1 RAE1 RPL39P ENSG00000280387 FAM210B GCNT7 FAM209B HSALNG0131068
GH20J056426 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 11.6 +30.7 30706 5.8 RFX1 IKZF1 JUND MTA2 ZNF24 MTA1 DPF2 HDAC1 ETV6 TCF12 RF00017-3645 CASS4 RTF2 RPL39P FAM209A FAM210B
GH20J056432 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 11.9 +25.3 25328 3.8 EGR1 ZFHX2 BHLHE40 MAFK TBX21 ZMYM3 ZNF24 EGR2 NFE2L2 SPI1 CASS4 RTF2 RPL39P RF00017-3645
GH20J056483 Enhancer 0.6 ENCODE dbSUPER 11 -24.3 -24301 1.3 TOE1 CTCF SPI1 GABPA RAD51 FAM209A RPL39P AURKA CSTF1 FAM210B RF00994-589 LOC105372681 RTF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL39P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL39P Gene

Genomic Locations for RPL39P Gene
chr20:56,459,235-56,459,632
(GRCh38/hg38)
Size:
398 bases
Orientation:
Minus strand
chr20:55,034,291-55,034,688
(GRCh37/hg19)
Size:
398 bases
Orientation:
Minus strand

Genomic View for RPL39P Gene

Genes around RPL39P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P Gene

Proteins for RPL39P Gene

Post-translational modifications for RPL39P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P Gene

Domains & Families for RPL39P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL39P Gene

Function for RPL39P Gene

Phenotypes From GWAS Catalog for RPL39P Gene

Phenotypes for RPL39P Gene

genes like me logo Genes that share phenotypes with RPL39P: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P Gene

Localization for RPL39P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P Gene

Pathways & Interactions for RPL39P Gene

PathCards logo

SuperPathways for RPL39P Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL39P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL39P Gene

Drugs & Compounds for RPL39P Gene

No Compound Related Data Available

Transcripts for RPL39P Gene

mRNA/cDNA for RPL39P Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P Gene

No ASD Table

Relevant External Links for RPL39P Gene

GeneLoc Exon Structure for
RPL39P

Expression for RPL39P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL39P Gene

mRNA differential expression in normal tissues according to GTEx for RPL39P Gene

This gene is overexpressed in Whole Blood (x10.9) and Lung (x10.5).
genes like me logo Genes that share expression patterns with RPL39P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P Gene

Orthologs for RPL39P Gene

Evolution for RPL39P Gene

ENSEMBL:
Gene Tree for RPL39P (if available)
TreeFam:
Gene Tree for RPL39P (if available)

No data available for Orthologs for RPL39P Gene

Paralogs for RPL39P Gene

No data available for Paralogs for RPL39P Gene

Variants for RPL39P Gene

Additional Variant Information for RPL39P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P Gene

Disorders for RPL39P Gene

No disorders were found for RPL39P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P Gene

Publications for RPL39P Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

Products for RPL39P Gene

Sources for RPL39P Gene