Aliases for RPL36P17 Gene

Aliases for RPL36P17 Gene

  • Ribosomal Protein L36 Pseudogene 17 2 3
  • Ribosomal Protein L36 (RPL36) Pseudogene 5
  • RPL36_8_1743 3
  • AC003071.1 5

External Ids for RPL36P17 Gene

Previous GeneCards Identifiers for RPL36P17 Gene

  • GC22U900523
  • GC22M030502

Summaries for RPL36P17 Gene

GeneCards Summary for RPL36P17 Gene

RPL36P17 (Ribosomal Protein L36 Pseudogene 17) is a Pseudogene.

Additional gene information for RPL36P17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL36P17 Gene

Genomics for RPL36P17 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL36P17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J030103 Enhancer 0.3 Ensembl 250.7 +0.3 307 1 EP300 RPL36P17 lnc-LIF-3 MTMR3 HORMAD2-AS1 LIF OSM LOC105372988 LIF-AS1 CASTOR1 SEC14L2
GH22J030108 Enhancer 1 Ensembl ENCODE 0.7 -3.4 -3351 0.9 CTCF REST ZNF639 TRIM22 ZNF148 SMC3 RAD21 HLTF ZNF571 THRAP3 ASCC2 HORMAD2-AS1 EWSR1 TUG1 RPL36P17 lnc-LIF-3 HORMAD2 RPS3AP51 HSALNG0134864 LIF
GH22J030115 Enhancer 0.8 Ensembl ENCODE 0.4 -11.2 -11177 1.7 CEBPA CTCF ZNF623 FOXA2 PRDM6 JUND SOX5 SCRT1 HHEX CEBPG MTMR3 ASCC2 HORMAD2-AS1 RPL36P17 lnc-LIF-3 HSALNG0134864 RPS3AP51 HORMAD2 LIF
GH22J030127 Enhancer 0.5 Ensembl 0.3 -22.3 -22293 1.4 SPI1 MAFK CEBPG CEBPB ATF3 CTBP1 IKZF1 LIF HSALNG0134864 RPS3AP51 RPL36P17 lnc-LIF-3 HORMAD2
GH22J030121 Enhancer 0.4 Ensembl 0.4 -16.6 -16593 0.4 BHLHE40 SRF PKNOX1 SMTN THOC5 LIF LIF-AS1 CASTOR1 RPL36P17 RPS3AP51 lnc-LIF-3 HSALNG0134864 HORMAD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL36P17 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL36P17 Gene

Latest Assembly
chr22:30,105,094-30,105,408
(GRCh38/hg38)
Size:
315 bases
Orientation:
Minus strand

Previous Assembly
chr22:30,501,089-30,501,397
(GRCh37/hg19 by Entrez Gene)
Size:
309 bases
Orientation:
Minus strand

chr22:30,501,083-30,501,397
(GRCh37/hg19 by Ensembl)
Size:
315 bases
Orientation:
Minus strand

Genomic View for RPL36P17 Gene

Genes around RPL36P17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL36P17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL36P17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36P17 Gene

Proteins for RPL36P17 Gene

Post-translational modifications for RPL36P17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL36P17 Gene

Domains & Families for RPL36P17 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL36P17 Gene

Function for RPL36P17 Gene

Phenotypes From GWAS Catalog for RPL36P17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL36P17 Gene

Localization for RPL36P17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL36P17 Gene

Pathways & Interactions for RPL36P17 Gene

PathCards logo

SuperPathways for RPL36P17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL36P17 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL36P17 Gene

Drugs & Compounds for RPL36P17 Gene

No Compound Related Data Available

Transcripts for RPL36P17 Gene

mRNA/cDNA for RPL36P17 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36P17 Gene

No ASD Table

Relevant External Links for RPL36P17 Gene

GeneLoc Exon Structure for
RPL36P17

Expression for RPL36P17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL36P17 Gene

mRNA differential expression in normal tissues according to GTEx for RPL36P17 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with RPL36P17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL36P17 Gene

Orthologs for RPL36P17 Gene

Evolution for RPL36P17 Gene

ENSEMBL:
Gene Tree for RPL36P17 (if available)
TreeFam:
Gene Tree for RPL36P17 (if available)

No data available for Orthologs for RPL36P17 Gene

Paralogs for RPL36P17 Gene

No data available for Paralogs for RPL36P17 Gene

Variants for RPL36P17 Gene

Additional Variant Information for RPL36P17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL36P17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL36P17 Gene

Disorders for RPL36P17 Gene

No disorders were found for RPL36P17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL36P17 Gene

Publications for RPL36P17 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPL36P17 Gene

Products for RPL36P17 Gene

Sources for RPL36P17 Gene