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Aliases for RPL36AP45 Gene

Subcategory (RNA class) for RPL36AP45 Gene

lncRNA

Aliases for RPL36AP45 Gene

  • Ribosomal Protein L36a Pseudogene 45 2 3
  • RPL36A_20_1453 3

External Ids for RPL36AP45 Gene

ORGUL Members for RPL36AP45 Gene

Previous GeneCards Identifiers for RPL36AP45 Gene

  • GC15U901018
  • GC15M075479

Summaries for RPL36AP45 Gene

GeneCards Summary for RPL36AP45 Gene

RPL36AP45 (Ribosomal Protein L36a Pseudogene 45) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL36AP45 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL36AP45 Gene

Genomics for RPL36AP45 Gene

GeneHancer (GH) Regulatory Elements for RPL36AP45 Gene

Promoters and enhancers for RPL36AP45 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I075181 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 +4.5 4539 1.6 ZSCAN5A SOX13 CTCF KLF1 FOXA2 SAP130 ZFP64 ARID4B DMAP1 ZSCAN9 RPP25 C15orf39 RPL36AP45 GC15M075020
GH15I075177 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.2 8215 2.5 FOXA2 ARID4B ZNF48 RARA ATF7 SP5 CEBPB REST KAT8 ZNF148 RPP25 MAN2C1 C15orf39 CSK SIN3A RPL36AP45 GC15M075020
GH15I075180 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +6.3 6272 0.8 PKNOX1 FOXA2 ARNT ZSCAN4 MZF1 FEZF1 ZNF335 TCF12 RCOR1 EGR2 SIN3A MAN2C1 LOC101929333 ENSG00000260274 CLK3 UBL7-AS1 SCAMP2 RPP25 RPL36AP45 GC15M075020
GH15I075175 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +10.9 10882 1.7 HDAC1 ELF3 TEAD4 MAX ZMYM3 CEBPG ZKSCAN1 ZNF121 RBAK POLR2A FBXO22 DNM1P35 MAN2C1 ENSG00000203392 PPCDC RPL36AP45 GC15M075020
GH15I075167 Enhancer 1 Ensembl ENCODE 0.4 +19.0 18980 1 HDAC1 NCOA2 TCF12 ATF7 NFYA CAVIN1 ZNF592 KLF16 SMARCA4 KDM1A MAN2C1 ENSG00000260274 FBXO22 C15orf39 SIN3A ENSG00000203392 PPCDC SNX33 DNM1P35 ISLR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL36AP45 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL36AP45 Gene

Genomic Locations for RPL36AP45 Gene
chr15:75,186,651-75,186,968
(GRCh38/hg38)
Size:
318 bases
Orientation:
Minus strand
chr15:75,478,992-75,479,309
(GRCh37/hg19)

Genomic View for RPL36AP45 Gene

Genes around RPL36AP45 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL36AP45 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL36AP45 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36AP45 Gene

Proteins for RPL36AP45 Gene

Post-translational modifications for RPL36AP45 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL36AP45 Gene

Domains & Families for RPL36AP45 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL36AP45 Gene

Function for RPL36AP45 Gene

Phenotypes From GWAS Catalog for RPL36AP45 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL36AP45 Gene

Localization for RPL36AP45 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL36AP45 Gene

Pathways & Interactions for RPL36AP45 Gene

SuperPathways for RPL36AP45 Gene

No Data Available

Interacting Proteins for RPL36AP45 Gene

Gene Ontology (GO) - Biological Process for RPL36AP45 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL36AP45 Gene

Drugs & Compounds for RPL36AP45 Gene

No Compound Related Data Available

Transcripts for RPL36AP45 Gene

mRNA/cDNA for RPL36AP45 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36AP45 Gene

No ASD Table

Relevant External Links for RPL36AP45 Gene

GeneLoc Exon Structure for
RPL36AP45
ECgene alternative splicing isoforms for
RPL36AP45

Expression for RPL36AP45 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL36AP45 Gene

mRNA differential expression in normal tissues according to GTEx for RPL36AP45 Gene

This gene is overexpressed in Whole Blood (x5.1) and Testis (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of RPL36AP45 Gene:

RPL36AP45
genes like me logo Genes that share expression patterns with RPL36AP45: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL36AP45 Gene

Orthologs for RPL36AP45 Gene

Evolution for RPL36AP45 Gene

ENSEMBL:
Gene Tree for RPL36AP45 (if available)
TreeFam:
Gene Tree for RPL36AP45 (if available)

No data available for Orthologs for RPL36AP45 Gene

Paralogs for RPL36AP45 Gene

No data available for Paralogs for RPL36AP45 Gene

Variants for RPL36AP45 Gene

Additional Variant Information for RPL36AP45 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL36AP45

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL36AP45 Gene

Disorders for RPL36AP45 Gene

No disorders were found for RPL36AP45 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL36AP45 Gene

Publications for RPL36AP45 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3 58

Products for RPL36AP45 Gene

Sources for RPL36AP45 Gene

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