Aliases for RPL36AP39 Gene

Aliases for RPL36AP39 Gene

  • Ribosomal Protein L36a Pseudogene 39 2 3 5
  • RPL36A_17_1112 3

External Ids for RPL36AP39 Gene

Previous GeneCards Identifiers for RPL36AP39 Gene

  • GC11U901266

Summaries for RPL36AP39 Gene

GeneCards Summary for RPL36AP39 Gene

RPL36AP39 (Ribosomal Protein L36a Pseudogene 39) is a Pseudogene.

Additional gene information for RPL36AP39 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL36AP39 Gene

Genomics for RPL36AP39 Gene

GeneHancer (GH) Regulatory Elements for RPL36AP39 Gene

Promoters and enhancers for RPL36AP39 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001792 Promoter 0.3 Ensembl 500.7 +0.3 276 0.8 RPL36AP39 lnc-SYT8-3 FAM99B KRTAP5-6 LINC02708 CTSD ENSG00000229512 ENSG00000250644 ENSG00000235027 SYT8
GH11J001780 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.2 -10234 3.4 ZFX TRIM28 HES1 CTBP1 MYC MXI1 OSR2 NCOR1 CREB1 ZNF316 LSP1 TNNI2 ENSG00000250397 SYT8 TOLLIP LOC105376517 RPL36AP39
GH11J001785 Enhancer 0.6 ENCODE dbSUPER 0.4 -6.6 -6579 0.2 CTCF POLR2A SMARCA4 SYT8 LOC105376517 RPL36AP39
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL36AP39 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL36AP39 Gene

Genomic Locations for RPL36AP39 Gene
chr11:1,792,525-1,792,920
(GRCh38/hg38)
Size:
396 bases
Orientation:
Plus strand
chr11:1,813,755-1,814,150
(GRCh37/hg19)
Size:
396 bases
Orientation:
Plus strand

Genomic View for RPL36AP39 Gene

Genes around RPL36AP39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL36AP39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL36AP39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36AP39 Gene

Proteins for RPL36AP39 Gene

Post-translational modifications for RPL36AP39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL36AP39 Gene

Domains & Families for RPL36AP39 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL36AP39 Gene

Function for RPL36AP39 Gene

Phenotypes From GWAS Catalog for RPL36AP39 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL36AP39 Gene

Localization for RPL36AP39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL36AP39 Gene

Pathways & Interactions for RPL36AP39 Gene

PathCards logo

SuperPathways for RPL36AP39 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPL36AP39 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL36AP39 Gene

Drugs & Compounds for RPL36AP39 Gene

No Compound Related Data Available

Transcripts for RPL36AP39 Gene

mRNA/cDNA for RPL36AP39 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36AP39 Gene

No ASD Table

Relevant External Links for RPL36AP39 Gene

GeneLoc Exon Structure for
RPL36AP39

Expression for RPL36AP39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL36AP39 Gene

mRNA differential expression in normal tissues according to GTEx for RPL36AP39 Gene

This gene is overexpressed in Testis (x36.5), Bladder (x8.3), and Skin - Not Sun Exposed (Suprapubic) (x8.2).
genes like me logo Genes that share expression patterns with RPL36AP39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL36AP39 Gene

Orthologs for RPL36AP39 Gene

Evolution for RPL36AP39 Gene

ENSEMBL:
Gene Tree for RPL36AP39 (if available)
TreeFam:
Gene Tree for RPL36AP39 (if available)

No data available for Orthologs for RPL36AP39 Gene

Paralogs for RPL36AP39 Gene

No data available for Paralogs for RPL36AP39 Gene

Variants for RPL36AP39 Gene

Additional Variant Information for RPL36AP39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL36AP39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL36AP39 Gene

Disorders for RPL36AP39 Gene

Additional Disease Information for RPL36AP39

Genetic Association Database
(GAD)

No disorders were found for RPL36AP39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL36AP39 Gene

Publications for RPL36AP39 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54

Products for RPL36AP39 Gene

Sources for RPL36AP39 Gene