RPL35P6 Gene (Pseudogene)

Ribosomal Protein L35 Pseudogene 6

GC08M018774
GIFtS:
7
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Aliases for RPL35P6 Gene

Aliases for RPL35P6 Gene

  • Ribosomal Protein L35 Pseudogene 6 2 3 5
  • RPL35_5_881 3
  • RPL35P6 5

External Ids for RPL35P6 Gene

Previous GeneCards Identifiers for RPL35P6 Gene

  • GC08U901171
  • GC08M018633

Summaries for RPL35P6 Gene

GeneCards Summary for RPL35P6 Gene

RPL35P6 (Ribosomal Protein L35 Pseudogene 6) is a Pseudogene.

Additional gene information for RPL35P6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL35P6 Gene

Genomics for RPL35P6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPL35P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH08J018814 Enhancer 0.9 Ensembl ENCODE dbSUPER 5 -40.7 -40738 3.4 CTCF JUND FOS GABPA SMC3 ELK4 FOSL2 RAD21 ZNF654 JUN PSD3 RPL35P6 HSALNG0063725 ENSG00000283402 NAT2
GH08J018771 Enhancer 0.7 Ensembl ENCODE 6.3 +5.3 5322 3.3 SP1 CEBPB RAD21 HNF4A SMARCA4 HNF4G NANOG POU5F1 RXRA PSD3 RPL35P6 lnc-CSGALNACT1-4 piR-34697-031 NAT2
GH08J019412 Enhancer 0.9 Ensembl ENCODE 4.8 -638.8 -638800 4.7 CREB1 GATAD2A ATF7 PRDM1 ZSCAN4 REST ZNF239 ZNF792 CEBPB SP1 CSGALNACT1 INTS10 RPL35P6 LOC102724881 SH2D4A LOC105379308
GH08J019437 Enhancer 0.9 Ensembl ENCODE 4.6 -663.5 -663538 3 GATAD2A SOX13 REST ZNF211 TCF7 SP1 ATF3 NR3C1 FOXA2 ZBTB40 CSGALNACT1 RPL35P6 LOC102724881 LOC105379308 SH2D4A
GH08J019279 Enhancer 0.6 ENCODE 4.6 -505.4 -505400 1.1 GATAD2A SP1 CEBPA SOX13 FOXA2 TEAD1 TFAP4 HNF4A NFIL3 RXRA SH2D4A RPL35P6 ENSG00000279919 LOC105379306 RF00017-6867 PSD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL35P6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL35P6 Gene

Genomic Locations for RPL35P6 Gene
chr8:18,774,547-18,774,963
(GRCh38/hg38)
Size:
417 bases
Orientation:
Minus strand
chr8:18,632,057-18,632,476
(GRCh37/hg19)
Size:
420 bases
Orientation:
Minus strand

Genomic View for RPL35P6 Gene

Genes around RPL35P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL35P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL35P6 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL35P6 Gene

Proteins for RPL35P6 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL35P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL35P6 Gene

Domains & Families for RPL35P6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL35P6 Gene

Function for RPL35P6 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPL35P6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL35P6 Gene

Localization for RPL35P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL35P6 Gene

Pathways & Interactions for RPL35P6 Gene

PathCards logo

SuperPathways for RPL35P6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL35P6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL35P6 Gene

Drugs & Compounds for RPL35P6 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL35P6 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPL35P6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL35P6 Gene

No ASD Table

Relevant External Links for RPL35P6 Gene

GeneLoc Exon Structure for
RPL35P6

Expression for RPL35P6 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL35P6 Gene

mRNA expression in normal human tissues for RPL35P6 Gene
mRNA expression by GTEx for RPL35P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPL35P6 Gene

This gene is overexpressed in Heart - Left Ventricle (x18.6) and Heart - Atrial Appendage (x13.7).
genes like me logo Genes that share expression patterns with RPL35P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL35P6 Gene

Orthologs for RPL35P6 Gene

Evolution for RPL35P6 Gene

ENSEMBL:
Gene Tree for RPL35P6 (if available)
TreeFam:
Gene Tree for RPL35P6 (if available)

No data available for Orthologs for RPL35P6 Gene

Paralogs for RPL35P6 Gene

No data available for Paralogs for RPL35P6 Gene

Variants for RPL35P6 Gene

Additional Variant Information for RPL35P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL35P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL35P6 Gene

Disorders for RPL35P6 Gene

Additional Disease Information for RPL35P6

Genetic Association Database
(GAD)

No disorders were found for RPL35P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL35P6 Gene

Publications for RPL35P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 41
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 41

No data available for Mastermind for RPL35P6 Gene

Products for RPL35P6 Gene

Sources for RPL35P6 Gene