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Aliases for RPL34-AS1 Gene

Subcategory (RNA class) for RPL34-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RPL34-AS1 Gene

  • RPL34 Antisense RNA 1 (Head To Head) 2 3 5
  • RPL34 Antisense RNA 1 (Non-Protein Coding) 2 3
  • RPL34 Antisense RNA 1 2
  • RP11-462C24.1 3

External Ids for RPL34-AS1 Gene

Previous GeneCards Identifiers for RPL34-AS1 Gene

  • GC04M109461

Summaries for RPL34-AS1 Gene

GeneCards Summary for RPL34-AS1 Gene

RPL34-AS1 (RPL34 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RPL34-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL34-AS1 Gene

Genomics for RPL34-AS1 Gene

GeneHancer (GH) Regulatory Elements for RPL34-AS1 Gene

Promoters and enhancers for RPL34-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I108618 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 559.5 -0.6 -558 4.2 HNRNPUL1 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 RPL34 RPL34-AS1 PIR53159 SETP20 SEC24B CDC42P4 OSTC GC04P108610
GH04I108591 Enhancer 0.9 Ensembl ENCODE 16.9 +28.0 28000 1.1 SOX13 FOXA2 JUN ZNF644 RARA RERE ZNF366 HOMEZ GATAD2A HMG20B PIR53246 RPL34-AS1 RPL34 GC04P108610
GH04I108610 Enhancer 1.1 VISTA UCNEbase dbSUPER 9.5 +8.9 8929 1.6 CTCF GC04P108610 RPL34 RPL34-AS1
GH04I108030 Enhancer 0.9 ENCODE dbSUPER 9.8 +589.8 589750 1.9 CTCF CEBPG RAD21 RELA POLR2A ARID2 ZNF157 ZSCAN5C ZNF143 RFX1 HADH LOC101929595 RPL34 RPL34-AS1 GC04M107959 GC04P107997
GH04I108071 Enhancer 0.9 ENCODE dbSUPER 9.8 +547.9 547899 2.5 KLF1 PKNOX1 ZNF384 FEZF1 ZIC2 KLF5 ZNF366 SCRT2 ATF7 KLF7 RPL34 RPL34-AS1 CYP2U1 HADH GC04M107959 GC04P108129 LEF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL34-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL34-AS1 Gene

Genomic Locations for RPL34-AS1 Gene
chr4:108,538,190-108,620,460
(GRCh38/hg38)
Size:
82,271 bases
Orientation:
Minus strand
chr4:109,459,346-109,541,616
(GRCh37/hg19)

Genomic View for RPL34-AS1 Gene

Genes around RPL34-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL34-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL34-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL34-AS1 Gene

Proteins for RPL34-AS1 Gene

Post-translational modifications for RPL34-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL34-AS1 Gene

Domains & Families for RPL34-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL34-AS1 Gene

Function for RPL34-AS1 Gene

Phenotypes From GWAS Catalog for RPL34-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL34-AS1 Gene

Localization for RPL34-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL34-AS1 Gene

Pathways & Interactions for RPL34-AS1 Gene

SuperPathways for RPL34-AS1 Gene

No Data Available

Interacting Proteins for RPL34-AS1 Gene

Gene Ontology (GO) - Biological Process for RPL34-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL34-AS1 Gene

Drugs & Compounds for RPL34-AS1 Gene

No Compound Related Data Available

Transcripts for RPL34-AS1 Gene

mRNA/cDNA for RPL34-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL34-AS1 Gene

RPL34 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL34-AS1 Gene

No ASD Table

Relevant External Links for RPL34-AS1 Gene

GeneLoc Exon Structure for
RPL34-AS1
ECgene alternative splicing isoforms for
RPL34-AS1

Expression for RPL34-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL34-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RPL34-AS1 Gene

This gene is overexpressed in Testis (x7.7).

SOURCE GeneReport for Unigene cluster for RPL34-AS1 Gene:

Hs.683863
genes like me logo Genes that share expression patterns with RPL34-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL34-AS1 Gene

Orthologs for RPL34-AS1 Gene

Evolution for RPL34-AS1 Gene

ENSEMBL:
Gene Tree for RPL34-AS1 (if available)
TreeFam:
Gene Tree for RPL34-AS1 (if available)

No data available for Orthologs for RPL34-AS1 Gene

Paralogs for RPL34-AS1 Gene

No data available for Paralogs for RPL34-AS1 Gene

Variants for RPL34-AS1 Gene

Sequence variations from dbSNP and Humsavar for RPL34-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000003147 -- 108,600,308(-) G/A intron_variant
rs1000017473 -- 108,549,212(-) G/A intron_variant
rs1000027307 -- 108,568,603(-) C/G intron_variant
rs1000029567 -- 108,609,958(-) A/G intron_variant
rs1000057427 -- 108,617,623(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL34-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3601723 CNV gain 21293372
nsv1139296 CNV deletion 24896259

Additional Variant Information for RPL34-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL34-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL34-AS1 Gene

Disorders for RPL34-AS1 Gene

Additional Disease Information for RPL34-AS1

No disorders were found for RPL34-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL34-AS1 Gene

Publications for RPL34-AS1 Gene

  1. Long non-coding RNAs LOC285194, RP11-462C24.1 and Nbla12061 in serum provide a new approach for distinguishing patients with colorectal cancer from healthy controls. (PMID: 27683121) Wang C … Qi P (Oncotarget 2016) 2 3 58
  2. Low expression of novel lncRNA RP11-462C24.1 suggests a biomarker of poor prognosis in colorectal cancer. (PMID: 24908062) Shi D … Cai S (Medical oncology (Northwood, London, England) 2014) 2 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPL34-AS1 Gene

Sources for RPL34-AS1 Gene

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