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Aliases for RPL32P3 Gene

Aliases for RPL32P3 Gene

  • Ribosomal Protein L32 Pseudogene 3 2 3 5

External Ids for RPL32P3 Gene

Previous GeneCards Identifiers for RPL32P3 Gene

  • GC03M130585
  • GC03M129101
  • GC03M126487

Summaries for RPL32P3 Gene

GeneCards Summary for RPL32P3 Gene

RPL32P3 (Ribosomal Protein L32 Pseudogene 3) is a Pseudogene.

Additional gene information for RPL32P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL32P3 Gene

Genomics for RPL32P3 Gene

GeneHancer (GH) Regulatory Elements for RPL32P3 Gene

Promoters and enhancers for RPL32P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J129398 Promoter/Enhancer 1.5 Ensembl ENCODE 689.8 +0.4 382 2.2 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 RPL32P3 GC03M129400 SNORA7B ISY1 MBD4 ENSG00000244932 IFT122 H1FX RHO CNBP
GH03J129159 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 35.8 +238.1 238101 4.4 PKNOX1 CLOCK ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 ISY1 ISY1-RAB43 RPL32P3 ENSG00000244932 H1FX-AS1 CNBP MBD4 H1FX ENSG00000273437 GC03M129158
GH03J128877 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 38.4 +520.1 520103 3.6 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ACAD9 PIR50406 ENSG00000244932 RPL32P3 ISY1 H1FX LOC653712 H1FX-AS1 MBD4 RPS15AP16
GH03J129178 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 34 +217.1 217111 8.4 PKNOX1 SMAD1 FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 CNBP LOC105374101 RPL32P3 ENSG00000244932 ISY1 H1FX-AS1 MBD4 RPS15AP16 H1FX COPG1
GH03J129591 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 27.2 -201.3 -201319 19.4 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 PLXND1 ENSG00000244932 RPL32P3 ISY1 MBD4 RPS15AP16 ACAD9 RPN1 RHO H1FX-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL32P3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL32P3 gene promoter:
  • PPAR-gamma2
  • PPAR-gamma1
  • SRY
  • p300
  • FOXJ2
  • GATA-1
  • FOXJ2 (long isoform)
  • Nkx2-2
  • HFH-3
  • FOXI1

Genomic Locations for RPL32P3 Gene

Genomic Locations for RPL32P3 Gene
chr3:129,382,834-129,399,655
(GRCh38/hg38)
Size:
16,822 bases
Orientation:
Minus strand
chr3:129,101,677-129,118,498
(GRCh37/hg19)
Size:
16,822 bases
Orientation:
Minus strand

Genomic View for RPL32P3 Gene

Genes around RPL32P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL32P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL32P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL32P3 Gene

Proteins for RPL32P3 Gene

Post-translational modifications for RPL32P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL32P3 Gene

Domains & Families for RPL32P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL32P3 Gene

Function for RPL32P3 Gene

Phenotypes From GWAS Catalog for RPL32P3 Gene

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL32P3 Gene

Localization for RPL32P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL32P3 Gene

Pathways & Interactions for RPL32P3 Gene

SuperPathways for RPL32P3 Gene

No Data Available

Interacting Proteins for RPL32P3 Gene

Gene Ontology (GO) - Biological Process for RPL32P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL32P3 Gene

Drugs & Compounds for RPL32P3 Gene

No Compound Related Data Available

Transcripts for RPL32P3 Gene

mRNA/cDNA for RPL32P3 Gene

(11) Additional mRNA sequences :
(59) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL32P3 Gene

Ribosomal protein L32 pseudogene 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL32P3 Gene

No ASD Table

Relevant External Links for RPL32P3 Gene

GeneLoc Exon Structure for
RPL32P3
ECgene alternative splicing isoforms for
RPL32P3

Expression for RPL32P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL32P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL32P3 Gene:

RPL32P3

SOURCE GeneReport for Unigene cluster for RPL32P3 Gene:

Hs.477537
genes like me logo Genes that share expression patterns with RPL32P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL32P3 Gene

Orthologs for RPL32P3 Gene

Evolution for RPL32P3 Gene

ENSEMBL:
Gene Tree for RPL32P3 (if available)
TreeFam:
Gene Tree for RPL32P3 (if available)

No data available for Orthologs for RPL32P3 Gene

Paralogs for RPL32P3 Gene

No data available for Paralogs for RPL32P3 Gene

Variants for RPL32P3 Gene

Sequence variations from dbSNP and Humsavar for RPL32P3 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000280491 -- 129,385,366(-) C/T intron_variant
rs1000353487 -- 129,382,440(-) T/C downstream_transcript_variant
rs1000932261 -- 129,385,245(-) G/A intron_variant
rs1001156513 -- 129,390,630(-) G/A intron_variant
rs1001174994 -- 129,393,653(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL32P3 Gene

Variant ID Type Subtype PubMed ID
nsv979877 CNV duplication 23825009
nsv965210 CNV duplication 23825009
nsv591658 CNV loss 21841781
nsv591652 CNV gain 21841781
esv3597741 CNV loss 21293372
esv2725901 CNV deletion 23290073
esv2620174 CNV deletion 19546169

Additional Variant Information for RPL32P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL32P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL32P3 Gene

Disorders for RPL32P3 Gene

Additional Disease Information for RPL32P3

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RPL32P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL32P3 Gene

Publications for RPL32P3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. (PMID: 21083371) Chinn LW … O'Brien SJ (The Journal of infectious diseases 2010) 44 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3

Products for RPL32P3 Gene

Sources for RPL32P3 Gene

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