Aliases for RPL31P11 Gene

Aliases for RPL31P11 Gene

  • Ribosomal Protein L31 Pseudogene 11 2 3 5
  • RPL31_1_108 3
  • RPL31P11 5

External Ids for RPL31P11 Gene

Previous GeneCards Identifiers for RPL31P11 Gene

  • GC01M159921
  • GC01M161653
  • GC01M132898

Summaries for RPL31P11 Gene

GeneCards Summary for RPL31P11 Gene

RPL31P11 (Ribosomal Protein L31 Pseudogene 11) is a Pseudogene.

Additional gene information for RPL31P11 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL31P11 Gene

Genomics for RPL31P11 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL31P11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J161675 Enhancer 0.9 Ensembl ENCODE 0.4 +8.5 8548 2.1 GATAD2A ATF7 FOXA1 PRDM1 RXRB SP1 FOXA2 ZNF316 MAFF MAFK ENSG00000234211 FCGR3B FCGR2B RPL31P11 FCRLA
GH01J161678 Enhancer 0.4 Ensembl 0.4 +6.7 6651 0.4 CEBPA NR2F2 ESRRA RXRA ENSG00000234211 RPL31P11 FCRLA FCGR2B
GH01J161679 Enhancer 0.2 Ensembl 0.4 +5.7 5651 0.4 ENSG00000234211 RPL31P11 FCRLA FCGR2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL31P11 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the RPL31P11 gene promoter:
  • CUTL1
  • Evi-1
  • GATA-1
  • LUN-1
  • SRF
  • SRF (504 AA)
  • STAT1
  • STAT1alpha
  • STAT3

Genomic Locations for RPL31P11 Gene

Genomic Locations for RPL31P11 Gene
chr1:161,683,695-161,685,252
(GRCh38/hg38)
Size:
1,558 bases
Orientation:
Minus strand
chr1:161,653,485-161,655,042
(GRCh37/hg19)
Size:
1,558 bases
Orientation:
Minus strand

Genomic View for RPL31P11 Gene

Genes around RPL31P11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL31P11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL31P11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL31P11 Gene

Proteins for RPL31P11 Gene

Post-translational modifications for RPL31P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL31P11 Gene

Domains & Families for RPL31P11 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL31P11 Gene

Function for RPL31P11 Gene

Phenotypes From GWAS Catalog for RPL31P11 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL31P11 Gene

Localization for RPL31P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL31P11 Gene

Pathways & Interactions for RPL31P11 Gene

PathCards logo

SuperPathways for RPL31P11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL31P11 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL31P11 Gene

Drugs & Compounds for RPL31P11 Gene

No Compound Related Data Available

Transcripts for RPL31P11 Gene

mRNA/cDNA for RPL31P11 Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL31P11 Gene

No ASD Table

Relevant External Links for RPL31P11 Gene

GeneLoc Exon Structure for
RPL31P11

Expression for RPL31P11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL31P11 Gene

mRNA differential expression in normal tissues according to GTEx for RPL31P11 Gene

This gene is overexpressed in Spleen (x9.3), Small Intestine - Terminal Ileum (x7.1), and Whole Blood (x5.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPL31P11

SOURCE GeneReport for Unigene cluster for RPL31P11 Gene:

Hs.625293
genes like me logo Genes that share expression patterns with RPL31P11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL31P11 Gene

Orthologs for RPL31P11 Gene

Evolution for RPL31P11 Gene

ENSEMBL:
Gene Tree for RPL31P11 (if available)
TreeFam:
Gene Tree for RPL31P11 (if available)

No data available for Orthologs for RPL31P11 Gene

Paralogs for RPL31P11 Gene

No data available for Paralogs for RPL31P11 Gene

Variants for RPL31P11 Gene

Structural Variations from Database of Genomic Variants (DGV) for RPL31P11 Gene

Variant ID Type Subtype PubMed ID
dgv447n100 CNV gain 25217958
dgv4n68 CNV gain+loss 17160897
dgv8e55 CNV gain 17911159
esv2758972 CNV gain+loss 17122850
esv33393 CNV gain+loss 17666407
nsv428257 CNV loss 18775914
nsv464184 CNV gain 19166990
nsv509546 CNV insertion 20534489
nsv517640 CNV gain+loss 19592680
nsv548075 CNV gain 21841781
nsv946471 CNV duplication 23825009
nsv997927 CNV gain 25217958

Additional Variant Information for RPL31P11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL31P11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPL31P11 Gene

Disorders for RPL31P11 Gene

Additional Disease Information for RPL31P11

No disorders were found for RPL31P11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL31P11 Gene

Publications for RPL31P11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease. (PMID: 25241909) Lee JH … COPDGene and ECLIPSE Investigators (Respiratory research 2014) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for RPL31P11 Gene

Sources for RPL31P11 Gene