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Aliases for RPL29P2 Gene

Subcategory (RNA class) for RPL29P2 Gene

lncRNA

Aliases for RPL29P2 Gene

  • Ribosomal Protein L29 Pseudogene 2 2 3 5
  • RPL29_10_1510 3

External Ids for RPL29P2 Gene

ORGUL Members for RPL29P2 Gene

Previous GeneCards Identifiers for RPL29P2 Gene

  • GC17P008123
  • GC17P008397
  • GC17P007600
  • GC17U900206
  • GC17P007602
  • GC17P007658

Summaries for RPL29P2 Gene

GeneCards Summary for RPL29P2 Gene

RPL29P2 (Ribosomal Protein L29 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL29P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL29P2 Gene

Genomics for RPL29P2 Gene

GeneHancer (GH) Regulatory Elements for RPL29P2 Gene

Promoters and enhancers for RPL29P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I007755 Enhancer 0.5 ENCODE 550.8 +1.0 1011 1 KLF1 USF1 POLR2A USF2 GC17M007753 RPL29P2 DNAH2 ATP1B2 ALOX15B EFNB3 WRAP53 GUCY2D TRAPPC1 CNTROB
GH17I007754 Enhancer 0.2 FANTOM5 550.8 -0.1 -77 0.2 RPL29P2 WRAP53 SLC35G6 DNAH2 EFNB3 ALOX15B TMEM88 CYB5D1 NAA38 NLGN2
GH17I007749 Enhancer 0.6 ENCODE 0.8 -3.8 -3789 1.8 JUN FEZF1 TSHZ1 EP300 ZEB1 ZNF664 PRDM6 JUND ZNF624 FOS DNAH2 EFNB3 WRAP53 ALOX15B TMEM88 CYB5D1 NAA38 LOC100996842 RPL29P2
GH17I007745 Enhancer 1 Ensembl ENCODE 0.4 -8.3 -8301 1.2 INSM2 KLF17 FEZF1 RAD21 RFX5 ZEB1 ZNF335 ZNF213 ZNF366 FOS RPL29P2 DNAH2
GH17I007743 Enhancer 0.8 ENCODE 0.4 -10.6 -10572 0.2 PKNOX1 ARID4B KLF17 SIN3A ZNF2 RAD21 RFX5 SLC30A9 ZNF335 ARID2 EFNB3 RPL29P2 DNAH2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL29P2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL29P2 gene promoter:

Genomic Locations for RPL29P2 Gene

Genomic Locations for RPL29P2 Gene
chr17:7,754,320-7,754,976
(GRCh38/hg38)
Size:
657 bases
Orientation:
Plus strand
chr17:7,657,638-7,658,294
(GRCh37/hg19)

Genomic View for RPL29P2 Gene

Genes around RPL29P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL29P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL29P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL29P2 Gene

Proteins for RPL29P2 Gene

Post-translational modifications for RPL29P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL29P2 Gene

Domains & Families for RPL29P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL29P2 Gene

Function for RPL29P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL29P2 Gene

Localization for RPL29P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL29P2 Gene

Pathways & Interactions for RPL29P2 Gene

SuperPathways for RPL29P2 Gene

No Data Available

Interacting Proteins for RPL29P2 Gene

Gene Ontology (GO) - Biological Process for RPL29P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL29P2 Gene

Drugs & Compounds for RPL29P2 Gene

No Compound Related Data Available

Transcripts for RPL29P2 Gene

mRNA/cDNA for RPL29P2 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL29P2 Gene

Ribosomal protein L29 pseudogene 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL29P2 Gene

No ASD Table

Relevant External Links for RPL29P2 Gene

GeneLoc Exon Structure for
RPL29P2
ECgene alternative splicing isoforms for
RPL29P2

Expression for RPL29P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL29P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL29P2 Gene:

RPL29P2

SOURCE GeneReport for Unigene cluster for RPL29P2 Gene:

Hs.658086
genes like me logo Genes that share expression patterns with RPL29P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL29P2 Gene

Orthologs for RPL29P2 Gene

Evolution for RPL29P2 Gene

ENSEMBL:
Gene Tree for RPL29P2 (if available)
TreeFam:
Gene Tree for RPL29P2 (if available)

No data available for Orthologs for RPL29P2 Gene

Paralogs for RPL29P2 Gene

No data available for Paralogs for RPL29P2 Gene

Variants for RPL29P2 Gene

Sequence variations from dbSNP and Humsavar for RPL29P2 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1002285293 -- 7,753,146(+) T/C upstream_transcript_variant
rs1002308166 -- 7,752,996(+) T/C upstream_transcript_variant
rs1002851139 -- 7,755,303(+) G/A/T downstream_transcript_variant
rs1005252729 -- 7,755,036(+) A/G downstream_transcript_variant
rs1005743715 -- 7,753,671(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL29P2 Gene

Variant ID Type Subtype PubMed ID
nsv962252 CNV duplication 23825009

Additional Variant Information for RPL29P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL29P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL29P2 Gene

Disorders for RPL29P2 Gene

Additional Disease Information for RPL29P2

No disorders were found for RPL29P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL29P2 Gene

Publications for RPL29P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL29P2 Gene

Sources for RPL29P2 Gene

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