Aliases for RPL28P5 Gene

Aliases for RPL28P5 Gene

  • Ribosomal Protein L28 Pseudogene 5 2 3
  • Ribosomal Protein L28 (RPL28) Pseudogene 5
  • RPL28_2_1625 3
  • AC012618.1 5

External Ids for RPL28P5 Gene

Previous GeneCards Identifiers for RPL28P5 Gene

  • GC19P012233
  • GC19P012371

Summaries for RPL28P5 Gene

GeneCards Summary for RPL28P5 Gene

RPL28P5 (Ribosomal Protein L28 Pseudogene 5) is a Pseudogene.

Additional gene information for RPL28P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL28P5 Gene

Genomics for RPL28P5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL28P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012260 Enhancer 0.2 Ensembl 600.7 +0.9 909 0.4 RPL28P5 piR-50437-339 ZNF44 LOC107984139 MN298114-105
GH19J012994 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 19.4 +736.6 736648 4.7 ARHGAP35 HNRNPL ZBTB33 IKZF1 ZNF692 LARP7 MTA2 ZIC2 ZSCAN4 RBFOX2 NFIX ZNF20 RNASEH2A DCAF15 TRMT1 ZNF136 ZNF44 RPL28P5 ZNF799 ZNF490
GH19J013148 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.5 +893.3 893300 10.8 ARHGAP35 CEBPG SP1 HNRNPL CREB1 GATAD2A CTCF ZBTB33 ATF7 TEAD4 STX10 ENSG00000267598 ENSG00000287296 IER2 MN297565 CCDC130 ZNF136 TRMT1 ZNF44 ZNF564
GH19J012609 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.7 +352.0 351983 5.4 SP1 HNRNPL CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 TFE3 RFX1 ZNF490 ZNF791 piR-44933 ZNF136 ZNF44 ZNF442 ZNF20 ZNF844 ZNF700 ZNF799
GH19J011343 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.7 -914.3 -914346 5 ZNF221 CEBPG SP1 CREB1 GATAD2A PRDM10 ZNF629 LEF1 SOX13 IKZF1 CCDC159 RAB3D TMEM205 lnc-EPOR-1 piR-50073 piR-50437-336 piR-44752 ILF3 ZNF136 KRI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL28P5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL28P5 Gene

Genomic Locations for RPL28P5 Gene
chr19:12,260,092-12,260,537
(GRCh38/hg38)
Size:
446 bases
Orientation:
Plus strand
chr19:12,370,941-12,371,397
(GRCh37/hg19)
Size:
457 bases
Orientation:
Plus strand

Genomic View for RPL28P5 Gene

Genes around RPL28P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL28P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL28P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL28P5 Gene

Proteins for RPL28P5 Gene

Post-translational modifications for RPL28P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL28P5 Gene

Domains & Families for RPL28P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL28P5 Gene

Function for RPL28P5 Gene

Phenotypes From GWAS Catalog for RPL28P5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL28P5 Gene

Localization for RPL28P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL28P5 Gene

Pathways & Interactions for RPL28P5 Gene

PathCards logo

SuperPathways for RPL28P5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL28P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL28P5 Gene

Drugs & Compounds for RPL28P5 Gene

No Compound Related Data Available

Transcripts for RPL28P5 Gene

mRNA/cDNA for RPL28P5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL28P5 Gene

No ASD Table

Relevant External Links for RPL28P5 Gene

GeneLoc Exon Structure for
RPL28P5

Expression for RPL28P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL28P5 Gene

mRNA differential expression in normal tissues according to GTEx for RPL28P5 Gene

This gene is overexpressed in Testis (x4.9).
genes like me logo Genes that share expression patterns with RPL28P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL28P5 Gene

Orthologs for RPL28P5 Gene

Evolution for RPL28P5 Gene

ENSEMBL:
Gene Tree for RPL28P5 (if available)
TreeFam:
Gene Tree for RPL28P5 (if available)

No data available for Orthologs for RPL28P5 Gene

Paralogs for RPL28P5 Gene

No data available for Paralogs for RPL28P5 Gene

Variants for RPL28P5 Gene

Additional Variant Information for RPL28P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL28P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL28P5 Gene

Disorders for RPL28P5 Gene

No disorders were found for RPL28P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL28P5 Gene

Publications for RPL28P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

Products for RPL28P5 Gene

Sources for RPL28P5 Gene