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Aliases for RPL27AP6 Gene

Aliases for RPL27AP6 Gene

  • Ribosomal Protein L27a Pseudogene 6 2 3
  • RPL27A_4_770 3
  • AL590867.2 5

External Ids for RPL27AP6 Gene

Previous GeneCards Identifiers for RPL27AP6 Gene

  • GC06M153647
  • GC06M153604

Summaries for RPL27AP6 Gene

Entrez Gene Summary for RPL27AP6 Gene

  • Although this locus has an open reading frame that could produce a protein of the same or nearly the same size as that of the RPL27A gene, there is no convincing evidence of transcription. It is thus being annotated as a pseudogene.[provided by RefSeq, Feb 2009]

GeneCards Summary for RPL27AP6 Gene

RPL27AP6 (Ribosomal Protein L27a Pseudogene 6) is a Pseudogene.

Additional gene information for RPL27AP6 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL27AP6 Gene

Genomics for RPL27AP6 Gene

GeneHancer (GH) Regulatory Elements for RPL27AP6 Gene

Promoters and enhancers for RPL27AP6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I153282 Promoter 0.5 Ensembl 550.8 +0.1 53 0.2 RPL27AP6 ENSG00000213121
GH06I152980 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.3 +299.7 299662 5.7 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 FBXO5 ENSG00000227627 GC06P152985 PIR33309 MTRF1L RPL27AP6 ENSG00000220745
GH06I153787 Enhancer 0.7 ENCODE 10.9 -504.9 -504853 0.9 ZNF202 SP5 ZBTB11 ZFP64 ZNF140 ZNF266 ZC3H11A REST ZNF644 ZNF560 FBXO5 SCAF8 RPL27AP6 RNU6-896P GC06M153939
GH06I153786 Enhancer 0.7 ENCODE 10.9 -504.1 -504087 0.1 JUN ZFP64 ZNF140 ZNF266 ZNF697 ZNF213 FOS ZNF433 ZNF202 ZBTB11 FBXO5 SCAF8 RGS17 RPL27AP6 RNU6-896P GC06M153939
GH06I153406 Enhancer 0.2 ENCODE 0.1 -123.3 -123337 0 RNA5SP225 LOC105378066 RPL27AP6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL27AP6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL27AP6 Gene

Genomic Locations for RPL27AP6 Gene
chr6:153,282,249-153,282,754
(GRCh38/hg38)
Size:
506 bases
Orientation:
Minus strand
chr6:153,603,384-153,603,889
(GRCh37/hg19)

Genomic View for RPL27AP6 Gene

Genes around RPL27AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL27AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL27AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL27AP6 Gene

Proteins for RPL27AP6 Gene

Post-translational modifications for RPL27AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL27AP6 Gene

Domains & Families for RPL27AP6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL27AP6 Gene

Function for RPL27AP6 Gene

Phenotypes From GWAS Catalog for RPL27AP6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL27AP6 Gene

Localization for RPL27AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL27AP6 Gene

Pathways & Interactions for RPL27AP6 Gene

SuperPathways for RPL27AP6 Gene

No Data Available

Interacting Proteins for RPL27AP6 Gene

Gene Ontology (GO) - Biological Process for RPL27AP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL27AP6 Gene

Drugs & Compounds for RPL27AP6 Gene

No Compound Related Data Available

Transcripts for RPL27AP6 Gene

mRNA/cDNA for RPL27AP6 Gene

(1) REFSEQ mRNAs :
(206) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL27AP6 Gene

No ASD Table

Relevant External Links for RPL27AP6 Gene

GeneLoc Exon Structure for
RPL27AP6
ECgene alternative splicing isoforms for
RPL27AP6

Expression for RPL27AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL27AP6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL27AP6 Gene:

RPL27AP6
genes like me logo Genes that share expression patterns with RPL27AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL27AP6 Gene

Orthologs for RPL27AP6 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL27AP6 Gene

Organism Taxonomy Gene Similarity Type Details
barley
(Hordeum vulgare)
Liliopsida Hv.2926 33
Species where no ortholog for RPL27AP6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPL27AP6 Gene

ENSEMBL:
Gene Tree for RPL27AP6 (if available)
TreeFam:
Gene Tree for RPL27AP6 (if available)

Paralogs for RPL27AP6 Gene

No data available for Paralogs for RPL27AP6 Gene

Variants for RPL27AP6 Gene

Additional Variant Information for RPL27AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL27AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL27AP6 Gene

Disorders for RPL27AP6 Gene

Additional Disease Information for RPL27AP6

Genetic Association Database
(GAD)

No disorders were found for RPL27AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL27AP6 Gene

Publications for RPL27AP6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation. (PMID: 26362536) Le Sage V … Mouland AJ (Virology journal 2015) 3 58
  3. LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells. (PMID: 23443559) Fogeron ML … Lange BM (Nature communications 2013) 3 58
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for RPL27AP6 Gene

Sources for RPL27AP6 Gene

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