Aliases for RPL23P8 Gene

Aliases for RPL23P8 Gene

  • Ribosomal Protein L23 Pseudogene 8 2 3 5
  • RPL23_4_790 3
  • RPL23P8 5

External Ids for RPL23P8 Gene

Previous GeneCards Identifiers for RPL23P8 Gene

  • GC07U902599
  • GC17M037004
  • GC07P020866
  • GC07P020752

Summaries for RPL23P8 Gene

GeneCards Summary for RPL23P8 Gene

RPL23P8 (Ribosomal Protein L23 Pseudogene 8) is a Pseudogene.

Additional gene information for RPL23P8 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23P8 Gene

Genomics for RPL23P8 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL23P8 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J020827 Promoter 0.6 Ensembl 600.7 +0.1 102 0.4 GABPA EHMT2 ZBTB40 GABPB1 ELF1 RPL23P8 lnc-ABCB5-3 SP8 LINC01162 SP4
GH07J020513 Enhancer 1 Ensembl ENCODE 11.6 -312.8 -312789 1.1 ZNF221 ZNF629 ZNF692 ZNF174 ZNF300 PRDM1 ZNF331 ZNF37A ZNF561 ZBTB44 RPL23P8 SP4 HSALNG0056497 piR-52324-061 ABCB5 ITGB8
GH07J020831 Enhancer 0.3 Ensembl 0.7 +4.5 4503 1.2 CTCF SP8 LINC01162 RPL23P8 lnc-ABCB5-3 SP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23P8 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the RPL23P8 gene promoter:
  • AML1a
  • AP-1
  • c-Fos
  • c-Jun
  • FOXF2
  • GATA-1
  • HNF-1
  • HNF-1A
  • Nkx2-2
  • TBP

Genomic Locations for RPL23P8 Gene

Genomic Locations for RPL23P8 Gene
chr7:20,827,298-20,827,820
(GRCh38/hg38)
Size:
523 bases
Orientation:
Plus strand
chr7:20,866,917-20,867,439
(GRCh37/hg19)
Size:
523 bases
Orientation:
Plus strand

Genomic View for RPL23P8 Gene

Genes around RPL23P8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23P8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23P8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23P8 Gene

Proteins for RPL23P8 Gene

Post-translational modifications for RPL23P8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23P8 Gene

Domains & Families for RPL23P8 Gene

Suggested Antigen Peptide Sequences for RPL23P8 Gene

GenScript: Design optimal peptide antigens:
  • Similar to ribosomal protein L23 (A4D142_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23P8 Gene

Function for RPL23P8 Gene

Phenotypes From GWAS Catalog for RPL23P8 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23P8 Gene

Localization for RPL23P8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23P8 Gene

Pathways & Interactions for RPL23P8 Gene

PathCards logo

SuperPathways for RPL23P8 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL23P8 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23P8 Gene

Drugs & Compounds for RPL23P8 Gene

No Compound Related Data Available

Transcripts for RPL23P8 Gene

mRNA/cDNA for RPL23P8 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23P8 Gene

No ASD Table

Relevant External Links for RPL23P8 Gene

GeneLoc Exon Structure for
RPL23P8

Expression for RPL23P8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23P8 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPL23P8

SOURCE GeneReport for Unigene cluster for RPL23P8 Gene:

Hs.722187
genes like me logo Genes that share expression patterns with RPL23P8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23P8 Gene

Orthologs for RPL23P8 Gene

Evolution for RPL23P8 Gene

ENSEMBL:
Gene Tree for RPL23P8 (if available)
TreeFam:
Gene Tree for RPL23P8 (if available)

No data available for Orthologs for RPL23P8 Gene

Paralogs for RPL23P8 Gene

No data available for Paralogs for RPL23P8 Gene

Variants for RPL23P8 Gene

Structural Variations from Database of Genomic Variants (DGV) for RPL23P8 Gene

Variant ID Type Subtype PubMed ID
nsv1030726 CNV gain 25217958

Additional Variant Information for RPL23P8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23P8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPL23P8 Gene

Disorders for RPL23P8 Gene

Additional Disease Information for RPL23P8

No disorders were found for RPL23P8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23P8 Gene

Publications for RPL23P8 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3

Products for RPL23P8 Gene

Sources for RPL23P8 Gene