Aliases for RPL23P4 Gene

Aliases for RPL23P4 Gene

  • Ribosomal Protein L23 Pseudogene 4 2 3 5
  • RPL23_2_327 3
  • RPL23P4 5

External Ids for RPL23P4 Gene

Previous GeneCards Identifiers for RPL23P4 Gene

  • GC02U901624
  • GC02P220564

Summaries for RPL23P4 Gene

GeneCards Summary for RPL23P4 Gene

RPL23P4 (Ribosomal Protein L23 Pseudogene 4) is a Pseudogene.

Additional gene information for RPL23P4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23P4 Gene

Genomics for RPL23P4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL23P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J219698 Enhancer 0.7 Ensembl dbSUPER 250.7 +1.0 1002 2 CEBPA FOXA2 FOSL2 ARID3A ZNF384 RNF2 SOX13 POLR2A USF1 EZH2 RPL23P4 lnc-SLC4A3-12 DNPEP LINC02832 HSALNG0022417-001 SLC4A3
GH02J219706 Enhancer 0.9 Ensembl dbSUPER 0.4 +9.7 9654 1.9 ZNF600 ZNF10 NFIC CEBPB FEZF1 ZEB1 ZNF610 ZNF843 PRDM6 GLI4 HSALNG0022417-001 RPL23P4 LINC02832 SLC4A3
GH02J219702 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 +5.6 5602 4 CEBPA PKNOX1 HLF STK11IP RPL23P4 HSALNG0022417-001 LINC02832 SLC4A3
GH02J219709 Enhancer 0.6 Ensembl ENCODE 0.4 +11.7 11702 1 SP1 RXRA NR2F2 ZNF121 HSALNG0022417-001 RPL23P4 LINC02832 SLC4A3
GH02J219714 Enhancer 0.2 dbSUPER 0.4 +17.1 17110 1.1 HSALNG0022417-001 RPL23P4 LINC02832 SLC4A3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23P4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL23P4 Gene

Latest Assembly
chr2:219,697,799-219,698,214
(GRCh38/hg38)
Size:
416 bases
Orientation:
Plus strand

Previous Assembly
chr2:220,562,535-220,562,936
(GRCh37/hg19 by Entrez Gene)
Size:
402 bases
Orientation:
Plus strand

chr2:220,562,521-220,562,936
(GRCh37/hg19 by Ensembl)
Size:
416 bases
Orientation:
Plus strand

Genomic View for RPL23P4 Gene

Genes around RPL23P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23P4 Gene

Proteins for RPL23P4 Gene

Post-translational modifications for RPL23P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23P4 Gene

Domains & Families for RPL23P4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23P4 Gene

Function for RPL23P4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23P4 Gene

Localization for RPL23P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23P4 Gene

Pathways & Interactions for RPL23P4 Gene

PathCards logo

SuperPathways for RPL23P4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL23P4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23P4 Gene

Drugs & Compounds for RPL23P4 Gene

No Compound Related Data Available

Transcripts for RPL23P4 Gene

mRNA/cDNA for RPL23P4 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23P4 Gene

No ASD Table

Relevant External Links for RPL23P4 Gene

GeneLoc Exon Structure for
RPL23P4

Expression for RPL23P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23P4 Gene

genes like me logo Genes that share expression patterns with RPL23P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23P4 Gene

Orthologs for RPL23P4 Gene

Evolution for RPL23P4 Gene

ENSEMBL:
Gene Tree for RPL23P4 (if available)
TreeFam:
Gene Tree for RPL23P4 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL23P4

No data available for Orthologs for RPL23P4 Gene

Paralogs for RPL23P4 Gene

No data available for Paralogs for RPL23P4 Gene

Variants for RPL23P4 Gene

Additional Variant Information for RPL23P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23P4
Leiden Open Variation Database (LOVD)
RPL23P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23P4 Gene

Disorders for RPL23P4 Gene

No disorders were found for RPL23P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23P4 Gene

Publications for RPL23P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D … Mitchell GF (BMC medical genetics 2007) 40
  3. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 40
  4. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 40
  5. Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study. (PMID: 17903303) O'Donnell CJ … Demissie S (BMC medical genetics 2007) 40

No data available for Mastermind for RPL23P4 Gene

Products for RPL23P4 Gene

Sources for RPL23P4 Gene