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Aliases for RPL23P4 Gene

Subcategory (RNA class) for RPL23P4 Gene

lncRNA

Aliases for RPL23P4 Gene

  • Ribosomal Protein L23 Pseudogene 4 2 3 5
  • RPL23_2_327 3

External Ids for RPL23P4 Gene

ORGUL Members for RPL23P4 Gene

Previous GeneCards Identifiers for RPL23P4 Gene

  • GC02U901624
  • GC02P220564

Summaries for RPL23P4 Gene

GeneCards Summary for RPL23P4 Gene

RPL23P4 (Ribosomal Protein L23 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL23P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23P4 Gene

Genomics for RPL23P4 Gene

GeneHancer (GH) Regulatory Elements for RPL23P4 Gene

Promoters and enhancers for RPL23P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I219683 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.4 -10.1 -10124 7.4 PKNOX1 ARID4B SIN3A ZNF143 RUNX3 SP3 CAVIN1 GTF2B NFYC REST OBSL1 CHPF TMEM198 SLC4A3 ENSG00000228973 DNPEP DNAJB2 ATG9A GC02M219685 LOC101059990
GH02I219702 Enhancer 0.7 ENCODE dbSUPER 0.4 +5.2 5152 1.8 PKNOX1 HLF CEBPA ZNF214 ENSG00000269068 ENSG00000268896 OBSL1 ENSG00000268603 STK11IP RPL23P4 LOC105373886 LOC105373887
GH02I219722 Enhancer 0.9 ENCODE dbSUPER 0.3 +24.7 24695 0.3 NCOA3 PKNOX1 ESRRA NFIB NEUROD1 SIN3A RARA E2F1 CTBP1 GATA3 LOC105373887 RPL23P4 LOC105373886
GH02I219724 Enhancer 0.8 dbSUPER 0.3 +26.8 26835 1.2 HDAC1 ATF1 FOXA2 TCF12 ATF7 CREM CEBPB ATF4 NFIC SMARCA4 LOC105373887 RPL23P4 LOC105373886
GH02I219737 Enhancer 0.6 ENCODE 0.3 +39.6 39615 0.2 CTCF ZNF654 ELF1 RAD21 GLIS1 SMC3 PRDM10 FOXP2 LOC105373887 RPL23P4 LOC105373886
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL23P4 Gene

Genomic Locations for RPL23P4 Gene
chr2:219,697,799-219,698,214
(GRCh38/hg38)
Size:
416 bases
Orientation:
Plus strand
chr2:220,562,521-220,562,936
(GRCh37/hg19)

Genomic View for RPL23P4 Gene

Genes around RPL23P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23P4 Gene

Proteins for RPL23P4 Gene

Post-translational modifications for RPL23P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23P4 Gene

Domains & Families for RPL23P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23P4 Gene

Function for RPL23P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23P4 Gene

Localization for RPL23P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23P4 Gene

Pathways & Interactions for RPL23P4 Gene

SuperPathways for RPL23P4 Gene

No Data Available

Interacting Proteins for RPL23P4 Gene

Gene Ontology (GO) - Biological Process for RPL23P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23P4 Gene

Drugs & Compounds for RPL23P4 Gene

No Compound Related Data Available

Transcripts for RPL23P4 Gene

mRNA/cDNA for RPL23P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23P4 Gene

No ASD Table

Relevant External Links for RPL23P4 Gene

GeneLoc Exon Structure for
RPL23P4
ECgene alternative splicing isoforms for
RPL23P4

Expression for RPL23P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23P4 Gene:

RPL23P4
genes like me logo Genes that share expression patterns with RPL23P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23P4 Gene

Orthologs for RPL23P4 Gene

Evolution for RPL23P4 Gene

ENSEMBL:
Gene Tree for RPL23P4 (if available)
TreeFam:
Gene Tree for RPL23P4 (if available)

No data available for Orthologs for RPL23P4 Gene

Paralogs for RPL23P4 Gene

No data available for Paralogs for RPL23P4 Gene

Variants for RPL23P4 Gene

Additional Variant Information for RPL23P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23P4 Gene

Disorders for RPL23P4 Gene

Additional Disease Information for RPL23P4

Genetic Association Database
(GAD)

No disorders were found for RPL23P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23P4 Gene

Publications for RPL23P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 44 58
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 44 58
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  5. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58

Products for RPL23P4 Gene

Sources for RPL23P4 Gene

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