Aliases for RPL23P11 Gene

Aliases for RPL23P11 Gene

  • Ribosomal Protein L23 Pseudogene 11 2 3 5
  • RPL23_6_1032 3
  • RPL23P11 5

External Ids for RPL23P11 Gene

Previous GeneCards Identifiers for RPL23P11 Gene

  • GC10U901136
  • GC10P034154

Summaries for RPL23P11 Gene

GeneCards Summary for RPL23P11 Gene

RPL23P11 (Ribosomal Protein L23 Pseudogene 11) is a Pseudogene.

Additional gene information for RPL23P11 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23P11 Gene

Genomics for RPL23P11 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL23P11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J033875 Enhancer 1 Ensembl ENCODE 0.4 +12.6 12572 1.8 GATAD2A RCOR2 RXRB SP1 GABPA CEBPA SOX13 CEBPB ETS1 EZH2 NRP1 HSALNG0077221 RPL23P11 lnc-CCDC7-20 PARD3
GH10J033857 Enhancer 0.5 Ensembl 0.7 -3.5 -3512 6 RFX5 CEBPB NFIC NFIB HNF4A RXRA SP1 PKNOX1 CREB1 RPL23P11 lnc-CCDC7-20 piR-33605-042 NRP1 PARD3
GH10J033868 Enhancer 0.6 Ensembl ENCODE 0.4 +5.5 5470 2.1 ATF7 RCOR1 FOXA1 ATF2 GATA2 RPL23P11 lnc-CCDC7-20 HSALNG0077221 NRP1 PARD3
GH10J033871 Enhancer 0.3 Ensembl 0.4 +7.5 7468 0.4 CREB1 NRP1 HSALNG0077221 RPL23P11 lnc-CCDC7-20 PARD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23P11 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL23P11 Gene

Genomic Locations for RPL23P11 Gene
chr10:33,864,313-33,864,723
(GRCh38/hg38)
Size:
411 bases
Orientation:
Plus strand
chr10:34,153,241-34,153,651
(GRCh37/hg19)
Size:
411 bases
Orientation:
Plus strand

Genomic View for RPL23P11 Gene

Genes around RPL23P11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23P11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23P11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23P11 Gene

Proteins for RPL23P11 Gene

Post-translational modifications for RPL23P11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23P11 Gene

Domains & Families for RPL23P11 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23P11 Gene

Function for RPL23P11 Gene

Phenotypes From GWAS Catalog for RPL23P11 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23P11 Gene

Localization for RPL23P11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23P11 Gene

Pathways & Interactions for RPL23P11 Gene

PathCards logo

SuperPathways for RPL23P11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL23P11 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23P11 Gene

Drugs & Compounds for RPL23P11 Gene

No Compound Related Data Available

Transcripts for RPL23P11 Gene

mRNA/cDNA for RPL23P11 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23P11 Gene

No ASD Table

Relevant External Links for RPL23P11 Gene

GeneLoc Exon Structure for
RPL23P11

Expression for RPL23P11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23P11 Gene

genes like me logo Genes that share expression patterns with RPL23P11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23P11 Gene

Orthologs for RPL23P11 Gene

Evolution for RPL23P11 Gene

ENSEMBL:
Gene Tree for RPL23P11 (if available)
TreeFam:
Gene Tree for RPL23P11 (if available)

No data available for Orthologs for RPL23P11 Gene

Paralogs for RPL23P11 Gene

No data available for Paralogs for RPL23P11 Gene

Variants for RPL23P11 Gene

Additional Variant Information for RPL23P11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23P11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23P11 Gene

Disorders for RPL23P11 Gene

Additional Disease Information for RPL23P11

Genetic Association Database
(GAD)

No disorders were found for RPL23P11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23P11 Gene

Publications for RPL23P11 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema. (PMID: 20709820) Kong X … ECLIPSE Study NETT Investigators (American journal of respiratory and critical care medicine 2011) 41
  3. Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples. (PMID: 21621269) Aragam N … Pan Y (Journal of affective disorders 2011) 41
  4. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PMID: 17903307) Wilk JB … O'Connor GT (BMC medical genetics 2007) 41

No data available for Mastermind for RPL23P11 Gene

Products for RPL23P11 Gene

Sources for RPL23P11 Gene