Aliases for RPL23AP89 Gene

Aliases for RPL23AP89 Gene

  • Ribosomal Protein L23a Pseudogene 89 2 3 5
  • RPL23AP89 5

External Ids for RPL23AP89 Gene

Previous GeneCards Identifiers for RPL23AP89 Gene

  • GC00U936227

Summaries for RPL23AP89 Gene

GeneCards Summary for RPL23AP89 Gene

RPL23AP89 (Ribosomal Protein L23a Pseudogene 89) is a Pseudogene.

Additional gene information for RPL23AP89 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23AP89 Gene

Genomics for RPL23AP89 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL23AP89 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J012078 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 600.7 +1.4 1395 1.4 CTCF IKZF1 KDM1A POLR2A BACH1 JUND LARP7 MTA2 ZNF143 RELA RF00026-008 RNU6-777P RPL23AP89 lnc-KIAA2013-2 TNFRSF8 TNFRSF1B
GH01J012081 Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 -1.1 -1143 1.4 IKZF1 ETV6 MTA2 PKNOX1 NR2C1 IKZF2 BRD9 ZNF24 GABPA YY1 RPL23AP89 lnc-KIAA2013-2 MIIP MFN2 UBIAD1 NPPA-AS1 piR-50443-002 TNFRSF8 TNFRSF1B
GH01J012018 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.4 +60.9 60912 2.9 SP1 CREB1 REST IKZF1 KDM1A POLR2A RCOR2 FOS JUND LARP7 MIIP piR-60051-001 UBIAD1 TNFRSF8 RNU6-777P RPL23AP89 PLOD1 KIAA2013 LINC01647 NPPA-AS1
GH01J012118 Enhancer 1 Ensembl ENCODE 11.7 -38.2 -38199 0.6 CTCF IKZF1 JUND MTA2 ZNF143 REST NR2C1 RAD21 BRD9 ZNF24 VPS13D RPL23AP89 RNU6-777P MIIP MFN2 piR-52079-007 piR-52079-006 TNFRSF1B TNFRSF8
GH01J012054 Enhancer 0.8 FANTOM5 dbSUPER 11.7 +26.1 26125 0.2 IKZF2 RUNX3 TCF12 ZNF592 IKZF1 JUNB EBF1 ATF4 TBP ATF7 TNFRSF8 RNU6-777P RPL23AP89 MFN2 MIIP piR-45471-006
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23AP89 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL23AP89 Gene

Genomic Locations for RPL23AP89 Gene
chr1:12,080,250-12,080,547
(GRCh38/hg38)
Size:
298 bases
Orientation:
Minus strand
chr1:12,140,350-12,140,604
(GRCh37/hg19)
Size:
255 bases
Orientation:
Minus strand

Genomic View for RPL23AP89 Gene

Genes around RPL23AP89 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP89 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP89 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP89 Gene

Proteins for RPL23AP89 Gene

Post-translational modifications for RPL23AP89 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP89 Gene

Domains & Families for RPL23AP89 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23AP89 Gene

Function for RPL23AP89 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP89 Gene

Localization for RPL23AP89 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP89 Gene

Pathways & Interactions for RPL23AP89 Gene

PathCards logo

SuperPathways for RPL23AP89 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL23AP89 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23AP89 Gene

Drugs & Compounds for RPL23AP89 Gene

No Compound Related Data Available

Transcripts for RPL23AP89 Gene

mRNA/cDNA for RPL23AP89 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP89 Gene

No ASD Table

Relevant External Links for RPL23AP89 Gene

GeneLoc Exon Structure for
RPL23AP89

Expression for RPL23AP89 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP89 Gene

Orthologs for RPL23AP89 Gene

Evolution for RPL23AP89 Gene

ENSEMBL:
Gene Tree for RPL23AP89 (if available)
TreeFam:
Gene Tree for RPL23AP89 (if available)

No data available for Orthologs for RPL23AP89 Gene

Paralogs for RPL23AP89 Gene

No data available for Paralogs for RPL23AP89 Gene

Variants for RPL23AP89 Gene

Additional Variant Information for RPL23AP89 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP89

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP89 Gene

Disorders for RPL23AP89 Gene

No disorders were found for RPL23AP89 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP89 Gene

Publications for RPL23AP89 Gene

No publications were found for RPL23AP89 Gene.

No data available for Mastermind for RPL23AP89 Gene

Products for RPL23AP89 Gene

Sources for RPL23AP89 Gene