Aliases for RPL23AP85 Gene

Aliases for RPL23AP85 Gene

  • Ribosomal Protein L23a Pseudogene 85 2 3 5
  • RPL23AP85 5

External Ids for RPL23AP85 Gene

Summaries for RPL23AP85 Gene

GeneCards Summary for RPL23AP85 Gene

RPL23AP85 (Ribosomal Protein L23a Pseudogene 85) is a Pseudogene.

Additional gene information for RPL23AP85 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23AP85 Gene

Genomics for RPL23AP85 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL23AP85 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J056585 Enhancer 0.6 Ensembl 250.7 +1.4 1441 0.4 ZNF654 CHD4 YY1 REST CTCF RFX5 SMC3 RAD21 ZNF362 ZNF792 RPL23AP85 lnc-FYB2-4 lnc-PRKAA2-9 LOC101929935 PLPP3 ENSG00000284686
GH01J056586 Enhancer 0.6 ENCODE 250.7 +1.1 1149 0.1 ZNF654 YY1 CTCF REST TRIM22 RAD21 RFX5 SMC3 ZNF362 ZNF792 RPL23AP85 lnc-FYB2-4 lnc-PRKAA2-9 LOC101929935 PLPP3 ENSG00000284686
GH01J056587 Enhancer 0.4 Ensembl 250.7 +0.4 441 0.4 RARA YY1 CTCF RPL23AP85 lnc-FYB2-4 lnc-PRKAA2-9 LOC101929935 PLPP3 ENSG00000284686
GH01J056572 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.0 9012 10.3 ZNF654 ZNF600 ZNF580 ZMYM3 CEBPA ZSCAN16 POLR2A ZIC2 ZBTB10 CHD4 PLPP3 C8A FYB2 C8B RPSAP20 PRKAA2 lnc-FYB2-4 RPL23AP85 lnc-PRKAA2-9 ENSG00000284686
GH01J056559 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +22.6 22641 7.6 ATF2 CEBPA YY1 BCL11A TRIM22 HOMEZ SIN3A THAP11 FOXA2 KDM6A lnc-FYB2-4 RPL23AP85 lnc-PRKAA2-9 ENSG00000284686 PLPP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23AP85 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL23AP85 Gene

Latest Assembly
chr1:56,585,612-56,586,242
(GRCh38/hg38)
Size:
631 bases
Orientation:
Minus strand

Previous Assembly
chr1:57,051,288-57,051,915
(GRCh37/hg19 by Entrez Gene)
Size:
628 bases
Orientation:
Minus strand

chr1:57,051,285-57,051,915
(GRCh37/hg19 by Ensembl)
Size:
631 bases
Orientation:
Minus strand

Genomic View for RPL23AP85 Gene

Genes around RPL23AP85 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP85 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP85 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP85 Gene

Proteins for RPL23AP85 Gene

Post-translational modifications for RPL23AP85 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP85 Gene

Domains & Families for RPL23AP85 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23AP85 Gene

Function for RPL23AP85 Gene

Phenotypes From GWAS Catalog for RPL23AP85 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP85 Gene

Localization for RPL23AP85 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP85 Gene

Pathways & Interactions for RPL23AP85 Gene

PathCards logo

SuperPathways for RPL23AP85 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL23AP85 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23AP85 Gene

Drugs & Compounds for RPL23AP85 Gene

No Compound Related Data Available

Transcripts for RPL23AP85 Gene

mRNA/cDNA for RPL23AP85 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP85 Gene

No ASD Table

Relevant External Links for RPL23AP85 Gene

GeneLoc Exon Structure for
RPL23AP85

Expression for RPL23AP85 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23AP85 Gene

genes like me logo Genes that share expression patterns with RPL23AP85: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP85 Gene

Orthologs for RPL23AP85 Gene

Evolution for RPL23AP85 Gene

ENSEMBL:
Gene Tree for RPL23AP85 (if available)
TreeFam:
Gene Tree for RPL23AP85 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL23AP85

No data available for Orthologs for RPL23AP85 Gene

Paralogs for RPL23AP85 Gene

No data available for Paralogs for RPL23AP85 Gene

Variants for RPL23AP85 Gene

Additional Variant Information for RPL23AP85 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP85
Leiden Open Variation Database (LOVD)
RPL23AP85

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP85 Gene

Disorders for RPL23AP85 Gene

No disorders were found for RPL23AP85 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP85 Gene

Publications for RPL23AP85 Gene

No publications were found for RPL23AP85 Gene.

No data available for Mastermind for RPL23AP85 Gene

Products for RPL23AP85 Gene

Sources for RPL23AP85 Gene