Aliases for RPL23AP74 Gene

Aliases for RPL23AP74 Gene

  • Ribosomal Protein L23a Pseudogene 74 2 3 5
  • RPL23A_37_1566 3
  • HCG2001000 3
  • RPL23AP74 5

External Ids for RPL23AP74 Gene

Previous GeneCards Identifiers for RPL23AP74 Gene

  • GC17P056501
  • GC17P059144

Summaries for RPL23AP74 Gene

GeneCards Summary for RPL23AP74 Gene

RPL23AP74 (Ribosomal Protein L23a Pseudogene 74) is a Pseudogene.

Additional gene information for RPL23AP74 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23AP74 Gene

Genomics for RPL23AP74 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL23AP74 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J061069 Promoter 0.4 Ensembl 250.7 +0.1 146 0.4 ARID3A ENSG00000267207 ENSG00000267449 RPL23AP74 lnc-TBX2-7 TBX2 BCAS3
GH17J061064 Enhancer 1 Ensembl ENCODE 0.7 -4.6 -4555 2.2 JUND ATF2 CEBPA ATF3 HOMEZ FOXA2 KDM6A MAFF RXRA SAP130 HEATR6 ENSG00000267207 RPL23AP74 HSALNG0117852 TBX2 BCAS3
GH17J061057 Enhancer 0.5 Ensembl 0.4 -12.3 -12254 1.6 IKZF1 BCL6B IKZF2 MTA2 ATF7 CEBPG TBX2 ENSG00000267207 RPL23AP74 HSALNG0117852 BCAS3
GH17J061053 Enhancer 0.4 Ensembl 0.4 -16.3 -16254 1.2 ZNF217 NONO FOXA1 NCOA3 RPL23AP74 ENSG00000267207 HSALNG0117852 TBX2 BCAS3
GH17J061030 Enhancer 0.5 Ensembl 0.3 -39.4 -39434 0.4 YY1 KAT2B HLF ZHX2 RNF2 ZNF579 HSALNG0117852 RPL23AP74 BCAS3 TBX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23AP74 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL23AP74 Gene

Latest Assembly
chr17:61,069,855-61,070,384
(GRCh38/hg38)
Size:
530 bases
Orientation:
Plus strand

Previous Assembly
chr17:59,147,216-59,147,745
(GRCh37/hg19 by Entrez Gene)
Size:
530 bases
Orientation:
Plus strand

chr17:59,147,232-59,147,702
(GRCh37/hg19 by Ensembl)
Size:
471 bases
Orientation:
Plus strand

Genomic View for RPL23AP74 Gene

Genes around RPL23AP74 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP74 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP74 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP74 Gene

Proteins for RPL23AP74 Gene

Post-translational modifications for RPL23AP74 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP74 Gene

Domains & Families for RPL23AP74 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23AP74 Gene

Function for RPL23AP74 Gene

Phenotypes for RPL23AP74 Gene

genes like me logo Genes that share phenotypes with RPL23AP74: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP74 Gene

Localization for RPL23AP74 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP74 Gene

Pathways & Interactions for RPL23AP74 Gene

PathCards logo

SuperPathways for RPL23AP74 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL23AP74 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23AP74 Gene

Drugs & Compounds for RPL23AP74 Gene

No Compound Related Data Available

Transcripts for RPL23AP74 Gene

mRNA/cDNA for RPL23AP74 Gene

1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP74 Gene

No ASD Table

Relevant External Links for RPL23AP74 Gene

GeneLoc Exon Structure for
RPL23AP74

Expression for RPL23AP74 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23AP74 Gene

mRNA expression in normal human tissues for RPL23AP74 Gene
genes like me logo Genes that share expression patterns with RPL23AP74: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP74 Gene

Orthologs for RPL23AP74 Gene

Evolution for RPL23AP74 Gene

ENSEMBL:
Gene Tree for RPL23AP74 (if available)
TreeFam:
Gene Tree for RPL23AP74 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPL23AP74

No data available for Orthologs for RPL23AP74 Gene

Paralogs for RPL23AP74 Gene

No data available for Paralogs for RPL23AP74 Gene

Variants for RPL23AP74 Gene

Additional Variant Information for RPL23AP74 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP74
Leiden Open Variation Database (LOVD)
RPL23AP74

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP74 Gene

Disorders for RPL23AP74 Gene

No disorders were found for RPL23AP74 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP74 Gene

Publications for RPL23AP74 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for RPL23AP74 Gene

Sources for RPL23AP74 Gene