Aliases for RPL23AP62 Gene

Aliases for RPL23AP62 Gene

  • Ribosomal Protein L23a Pseudogene 62 2 3 5
  • RPL23A_24_1177 3
  • RPL23AP62 5

External Ids for RPL23AP62 Gene

Previous GeneCards Identifiers for RPL23AP62 Gene

  • GC11U901275
  • GC11M112333

Summaries for RPL23AP62 Gene

GeneCards Summary for RPL23AP62 Gene

RPL23AP62 (Ribosomal Protein L23a Pseudogene 62) is a Pseudogene.

Additional gene information for RPL23AP62 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPL23AP62 Gene

Genomics for RPL23AP62 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPL23AP62 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J112426 Enhancer 0.3 Ensembl 0.3 +35.6 35619 0.2 ZIC2 LINC02763 lnc-PLET1-4 RPL23AP62 PLET1 NCAM1
GH11J112421 Enhancer 0.3 Ensembl 0.3 +39.9 39919 0.4 GATA2 LINC02763 lnc-PLET1-4 RPL23AP62 PLET1 NCAM1
GH11J112408 Enhancer 0.3 Ensembl ENCODE 0.2 +53.0 53019 1.4 RNU6-44P LINC02763 RPL23AP62 lnc-PLET1-4 PLET1 NCAM1
GH11J112409 Enhancer 0.3 Ensembl 0.2 +51.4 51419 0.6 SPI1 RNU6-44P LINC02763 RPL23AP62 lnc-PLET1-4 PLET1 NCAM1
GH11J112400 Enhancer 0.3 Ensembl 0.2 +61.2 61219 0.2 ZIC2 CREB1 RNU6-44P LINC02762 LINC02763 RPL23AP62 lnc-PLET1-4 PLET1 NCAM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPL23AP62 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPL23AP62 Gene

Latest Assembly
chr11:112,461,468-112,461,920
(GRCh38/hg38)
Size:
453 bases
Orientation:
Minus strand

Previous Assembly
chr11:112,332,206-112,332,643
(GRCh37/hg19 by Entrez Gene)
Size:
438 bases
Orientation:
Minus strand

chr11:112,332,191-112,332,643
(GRCh37/hg19 by Ensembl)
Size:
453 bases
Orientation:
Minus strand

Genomic View for RPL23AP62 Gene

Genes around RPL23AP62 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP62 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP62 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP62 Gene

Proteins for RPL23AP62 Gene

Post-translational modifications for RPL23AP62 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP62 Gene

Domains & Families for RPL23AP62 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPL23AP62 Gene

Function for RPL23AP62 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP62 Gene

Localization for RPL23AP62 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP62 Gene

Pathways & Interactions for RPL23AP62 Gene

PathCards logo

SuperPathways for RPL23AP62 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPL23AP62 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPL23AP62 Gene

Drugs & Compounds for RPL23AP62 Gene

No Compound Related Data Available

Transcripts for RPL23AP62 Gene

mRNA/cDNA for RPL23AP62 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP62 Gene

No ASD Table

Relevant External Links for RPL23AP62 Gene

GeneLoc Exon Structure for
RPL23AP62

Expression for RPL23AP62 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23AP62 Gene

genes like me logo Genes that share expression patterns with RPL23AP62: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP62 Gene

Orthologs for RPL23AP62 Gene

Evolution for RPL23AP62 Gene

ENSEMBL:
Gene Tree for RPL23AP62 (if available)
TreeFam:
Gene Tree for RPL23AP62 (if available)

No data available for Orthologs for RPL23AP62 Gene

Paralogs for RPL23AP62 Gene

No data available for Paralogs for RPL23AP62 Gene

Variants for RPL23AP62 Gene

Additional Variant Information for RPL23AP62 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP62

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP62 Gene

Disorders for RPL23AP62 Gene

Additional Disease Information for RPL23AP62

Genetic Association Database
(GAD)

No disorders were found for RPL23AP62 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP62 Gene

Publications for RPL23AP62 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 41

No data available for Mastermind for RPL23AP62 Gene

Products for RPL23AP62 Gene

Sources for RPL23AP62 Gene